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Os08g0201800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0462) R2 : 0.494
β1 : -1.07 (0.17) R2dD : 0.0492 R2D : -0.0147
β2 : 1.12 (0.113) R2dC : 0.111 R2C : 0.108
β3 : -0.397 (0.186) R2dE : 0.00789 R2E : 0.0389
β4 : 2.68 (0.484) R2dD*C : 0.0342 R2D*C : 0.0168
β5 : -10.6 (0.965) R2dD*E : 0.209 R2D*E : 0.156
γ1 : 0.772 (0.105) R2dN8 : 0.0978 R2N8 : 0.0702
σ : 0.842
deviance : 320.8
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C
peak time of C : 15.7
E
wheather : radiation
threshold : 20.74
memory length : 4214
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 16.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
320.8 0.842 6.13 -1.07 1.12 -0.397 2.68 -10.6 0.772 15.7 20.74 4214 15.9 16.1
409.41 0.942 6.12 -0.86 1.1 -0.903 2.85 -- 0.825 15.7 20.01 12562 15.7 16.7
341.25 0.86 6.12 -1.06 1.13 -0.414 -- -10.6 0.779 15.4 20.75 4234 15.9 16
410.35 0.943 6.21 0.143 1.14 -1.38 -- -- 0.583 15.1 20 2914 15.8 17.5
411.81 0.945 6.11 -1.04 -- -0.463 -- -10.6 0.77 -- 20.95 4239 15.9 16
468.43 1.01 6.17 -0.425 1.26 -- 2.9 -- 0.714 15.6 -- -- -- --
493.69 1.04 6.16 -0.377 1.27 -- -- -- 0.731 15.3 -- -- -- --
480.58 1.02 6.22 -0.248 -- -1.47 -- -- 0.582 -- 20.02 2900 15.8 17.2
407.25 0.94 6.21 -- 1.17 -1.4 -- -- 0.525 15.3 20.07 2914 15.9 17.5
584.63 1.13 6.16 -0.43 -- -- -- -- 0.697 -- -- -- -- --
497.43 1.04 6.15 -- 1.28 -- -- -- 0.773 15.3 -- -- -- --
481.81 1.02 6.22 -- -- -1.47 -- -- 0.583 -- 20.06 2906 15.9 17.2
589.52 1.13 6.15 -- -- -- -- -- 0.745 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 324.05 wind 3.0 43200 > th dose dependent rect. 5 8
4 325.07 wind 3.0 43200 > th dose dependent rect. 5 5
5 325.32 wind 1.0 43200 > th dose dependent rect. 8 1
7 325.48 wind 3.0 43200 > th dose independent rect. 7 2
10 326.20 wind 9.0 43200 < th dose dependent rect. 8 1
11 326.54 wind 7.0 43200 > th dose dependent rect. 10 3
14 326.75 radiation 20.0 4320 > th dose independent rect. 16 16
17 326.90 wind 3.0 43200 < th dose independent rect. 7 2
24 327.45 wind 3.0 43200 > th dose dependent rect. 5 2
31 327.92 wind 9.0 43200 < th dose dependent rect. 3 9
37 328.10 wind 1.0 43200 > th dose dependent rect. 24 12
44 328.44 temperature 25.0 14400 > th dose dependent rect. 24 14
46 328.47 temperature 25.0 14400 > th dose dependent rect. 10 1
47 328.47 wind 9.0 43200 < th dose dependent rect. 3 7
48 328.49 temperature 25.0 14400 > th dose dependent rect. 7 7
89 328.89 temperature 25.0 14400 > th dose dependent sin 4 NA
114 329.07 temperature 25.0 14400 > th dose independent rect. 5 4
115 329.07 wind 7.0 43200 > th dose independent rect. 6 7
116 329.08 temperature 25.0 14400 < th dose independent rect. 5 4
117 329.09 temperature 25.0 14400 < th dose independent rect. 7 1
122 329.11 wind 9.0 43200 < th dose dependent rect. 24 12
164 329.44 temperature 25.0 14400 > th dose dependent rect. 12 2
167 329.49 temperature 25.0 14400 > th dose independent rect. 7 1
212 329.85 wind 7.0 43200 < th dose independent rect. 6 7
228 329.92 wind 3.0 43200 > th dose independent rect. 3 6
264 330.25 temperature 25.0 14400 > th dose independent rect. 14 19
351 330.64 temperature 25.0 14400 > th dose dependent rect. 6 21
364 330.67 temperature 25.0 14400 > th dose dependent no NA NA
389 330.72 temperature 25.0 14400 > th dose dependent rect. 12 23
419 330.86 temperature 25.0 14400 > th dose independent sin 6 NA
422 330.87 temperature 25.0 14400 > th dose dependent rect. 10 23
424 330.90 wind 3.0 43200 < th dose independent rect. 3 6
435 330.99 temperature 25.0 14400 < th dose independent rect. 14 19
461 331.09 wind 7.0 43200 > th dose independent rect. 8 4
477 331.17 wind 7.0 43200 < th dose independent rect. 8 4
487 331.25 temperature 25.0 14400 < th dose independent sin 6 NA
546 331.57 temperature 25.0 14400 > th dose independent rect. 22 18
573 331.70 temperature 25.0 14400 > th dose independent rect. 20 20
619 331.88 wind 7.0 43200 < th dose independent rect. 10 1
621 331.88 wind 3.0 43200 < th dose dependent rect. 3 1
664 332.02 temperature 25.0 14400 < th dose independent rect. 23 17
687 332.09 wind 3.0 43200 > th dose dependent sin 5 NA
726 332.27 precipitation 0.1 43200 > th dose dependent rect. 3 2
730 332.28 wind 7.0 43200 > th dose independent rect. 10 1
755 332.37 precipitation 0.1 43200 > th dose dependent rect. 3 17
763 332.39 temperature 25.0 14400 > th dose independent rect. 22 23
795 332.51 temperature 25.0 14400 > th dose independent no NA NA
864 332.69 temperature 25.0 14400 > th dose independent rect. 5 23
900 332.81 temperature 25.0 14400 > th dose independent rect. 3 23
928 332.94 temperature 25.0 14400 > th dose independent sin 14 NA
970 333.05 temperature 25.0 14400 < th dose independent no NA NA
982 333.09 temperature 25.0 14400 < th dose independent rect. 3 23