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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0201700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.51 (0.0338) R2 : 0.377
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.37 (0.125) R2dE : 0.17 R2E : -0.00554
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.0723) R2dN8 : 0.382 R2N8 : 0.207
σ : 0.633
deviance : 184.57
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 5.49
memory length : 1849
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.5 0.597 3.55 -0.327 0.78 0.932 -1.2 -2.26 0.983 3.43 10 1441 -- --
169.85 0.607 3.53 -0.385 0.831 0.949 -1.13 -- 0.978 3.25 9.9 1422 -- --
165.78 0.6 3.55 -0.305 0.775 0.96 -- -2.22 0.997 3.28 9.81 1438 -- --
173.84 0.614 3.52 -0.367 0.812 0.982 -- -- 0.987 3.1 9.9 1422 -- --
171.89 0.611 3.54 -0.157 -- 1.36 -- -2.53 1.02 -- 5.736 1852 -- --
192.53 0.65 3.56 -0.263 0.779 -- -1.34 -- 0.835 3.38 -- -- -- --
198.14 0.659 3.55 -0.238 0.77 -- -- -- 0.843 3.24 -- -- -- --
182.24 0.629 3.52 -0.294 -- 1.4 -- -- 1.01 -- 5.65 1852 -- --
177.52 0.621 3.52 -- 0.826 0.943 -- -- 1.01 3.08 9.905 1423 -- --
231.77 0.711 3.55 -0.205 -- -- -- -- 0.863 -- -- -- -- --
199.63 0.661 3.55 -- 0.766 -- -- -- 0.869 3.24 -- -- -- --
184.57 0.633 3.51 -- -- 1.37 -- -- 1.04 -- 5.49 1849 -- --
232.88 0.712 3.55 -- -- -- -- -- 0.886 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.03 wind 9.0 43200 > th dose dependent rect. 15 2
2 158.33 wind 9.0 43200 > th dose independent rect. 21 1
3 158.55 wind 9.0 43200 < th dose independent rect. 21 1
4 158.98 radiation 10.0 43200 > th dose independent rect. 13 1
7 159.62 radiation 1.0 43200 < th dose independent rect. 13 1
8 159.62 radiation 1.0 43200 < th dose dependent rect. 13 1
26 160.45 wind 9.0 43200 > th dose dependent rect. 21 1
28 160.68 radiation 30.0 14400 > th dose independent rect. 7 1
43 160.73 radiation 10.0 1440 < th dose independent rect. 16 23
44 160.89 radiation 10.0 43200 > th dose independent rect. 8 1
45 160.98 radiation 10.0 1440 < th dose independent rect. 6 12
46 160.99 wind 9.0 43200 > th dose independent rect. 16 1
47 161.04 precipitation 0.1 43200 < th dose independent rect. 24 1
48 161.04 precipitation 0.1 43200 < th dose dependent rect. 24 1
50 161.08 humidity 80.0 43200 < th dose independent rect. 8 1
51 161.09 radiation 10.0 14400 > th dose independent rect. 5 3
63 161.10 radiation 10.0 1440 < th dose independent rect. 10 23
68 161.16 radiation 10.0 1440 < th dose independent rect. 6 16
72 161.18 radiation 10.0 1440 < th dose independent rect. 6 21
77 161.21 radiation 10.0 43200 > th dose independent rect. 7 7
94 161.28 radiation 10.0 1440 < th dose independent rect. 2 16
100 161.30 radiation 10.0 1440 < th dose independent rect. 21 21
125 161.48 precipitation 0.1 43200 > th dose independent rect. 24 1
142 161.48 precipitation 0.1 43200 > th dose dependent rect. 24 1
158 161.50 radiation 10.0 1440 < th dose independent no NA NA
199 161.75 radiation 10.0 1440 < th dose independent sin 0 NA
284 162.23 precipitation 0.1 43200 < th dose independent rect. 19 7
285 162.23 precipitation 0.1 43200 < th dose dependent rect. 19 7
292 162.33 radiation 10.0 1440 < th dose independent rect. 6 9
293 162.37 wind 1.0 43200 < th dose independent rect. 2 4
294 162.39 precipitation 0.1 43200 > th dose independent rect. 19 7
295 162.39 precipitation 0.1 43200 < th dose independent rect. 18 9
296 162.39 precipitation 0.1 43200 < th dose dependent rect. 18 9
302 162.48 humidity 70.0 43200 > th dose independent rect. 10 5
304 162.49 precipitation 0.1 43200 > th dose independent rect. 18 9
305 162.51 wind 1.0 43200 < th dose independent rect. 4 2
306 162.52 radiation 20.0 1440 < th dose independent rect. 7 6
308 162.54 atmosphere 995.0 43200 > th dose independent rect. 19 3
311 162.56 atmosphere 995.0 43200 < th dose dependent rect. 18 6
313 162.57 radiation 20.0 1440 < th dose independent rect. 2 11
316 162.58 radiation 10.0 43200 > th dose independent sin 6 NA
317 162.58 atmosphere 995.0 43200 > th dose independent rect. 22 1
325 162.60 atmosphere 995.0 43200 < th dose independent rect. 21 1
339 162.60 radiation 20.0 1440 < th dose independent rect. 23 14
340 162.60 atmosphere 995.0 43200 < th dose dependent rect. 21 1
356 162.61 radiation 20.0 1440 < th dose independent rect. 21 16
357 162.62 wind 9.0 43200 < th dose independent rect. 16 1
371 162.64 precipitation 0.1 43200 < th dose independent rect. 19 4
373 162.64 precipitation 0.1 43200 < th dose dependent rect. 19 4
374 162.64 precipitation 0.1 43200 > th dose dependent rect. 21 6
376 162.65 precipitation 0.1 43200 < th dose independent rect. 21 6
377 162.65 precipitation 0.1 43200 < th dose dependent rect. 21 6
385 162.71 humidity 80.0 43200 > th dose independent rect. 8 1
390 162.72 precipitation 0.1 43200 > th dose independent rect. 21 6
394 162.73 precipitation 0.1 43200 > th dose independent rect. 19 3
476 163.05 wind 1.0 43200 > th dose independent rect. 2 4
517 163.19 radiation 20.0 1440 < th dose independent sin 6 NA
518 163.21 precipitation 0.1 43200 < th dose independent rect. 8 19
519 163.21 precipitation 0.1 43200 < th dose dependent rect. 8 19
534 163.28 precipitation 0.1 43200 > th dose independent rect. 8 19
535 163.28 atmosphere 1005.0 43200 < th dose dependent rect. 23 1
585 163.48 wind 1.0 43200 > th dose independent rect. 5 1
592 163.50 precipitation 0.1 43200 < th dose independent rect. 12 15
593 163.50 precipitation 0.1 43200 < th dose dependent rect. 12 15
602 163.51 precipitation 0.1 43200 > th dose independent rect. 12 15
660 163.64 humidity 70.0 43200 < th dose independent rect. 11 4
751 163.76 wind 1.0 14400 < th dose dependent rect. 19 7
763 163.78 wind 9.0 43200 > th dose dependent rect. 11 1
790 163.82 radiation 20.0 1440 < th dose dependent rect. 17 20
791 163.83 humidity 70.0 43200 > th dose independent rect. 11 1
815 163.88 precipitation 0.1 43200 < th dose independent rect. 21 2
819 163.88 precipitation 0.1 43200 < th dose dependent rect. 21 2
830 163.91 precipitation 0.1 43200 > th dose independent rect. 21 2
862 163.94 radiation 20.0 1440 < th dose dependent rect. 6 7
867 163.96 precipitation 0.1 43200 > th dose dependent rect. 21 2
868 163.96 radiation 20.0 1440 < th dose dependent rect. 2 11
872 163.97 atmosphere 1005.0 43200 < th dose dependent rect. 1 1
881 163.98 radiation 20.0 1440 < th dose dependent rect. 4 9
893 163.99 humidity 90.0 43200 > th dose dependent rect. 12 1
907 164.00 radiation 20.0 1440 < th dose dependent rect. 23 14
917 164.01 radiation 20.0 1440 < th dose dependent rect. 21 16
956 164.06 precipitation 0.1 43200 < th dose independent rect. 9 4
960 164.06 precipitation 0.1 43200 < th dose dependent rect. 9 4
962 164.07 precipitation 0.1 43200 > th dose independent sin 17 NA
963 164.07 precipitation 0.1 43200 < th dose independent sin 17 NA
971 164.07 precipitation 0.1 43200 < th dose dependent sin 17 NA
995 164.11 radiation 20.0 1440 < th dose independent rect. 11 1