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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0201100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.049) R2 : 0.548
β1 : 1.09 (0.232) R2dD : 0.0486 R2D : 0.0715
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.57 (0.286) R2dE : 1.03 R2E : -0.0805
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.64 (1.02) R2dD*E : 0.408 R2D*E : -0.389
γ1 : 0.0233 (0.101) R2dN8 : 7.96e-05 R2N8 : -0.0196
σ : 0.814
deviance : 305.54
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.5255
memory length : 4420
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
300.28 0.814 4.56 1.08 0.507 5.29 0.56 9.26 -0.00749 1.15 0.5397 4375 -- --
346.2 0.867 4.33 2.68 0.595 3.66 0.682 -- 0.314 1.26 1.319 4364 -- --
301.18 0.808 4.57 0.996 0.428 5.38 -- 9.63 -0.0231 1.53 0.5167 4385 -- --
347.24 0.868 4.35 2.45 0.782 3.26 -- -- 0.247 0.793 1.293 4328 -- --
305.54 0.814 4.55 1.09 -- 5.57 -- 9.64 0.0233 -- 0.5255 4420 -- --
558.48 1.11 4.5 1.41 0.775 -- 0.965 -- -0.408 0.544 -- -- -- --
562.36 1.11 4.5 1.37 0.775 -- -- -- -0.413 0.782 -- -- -- --
355.21 0.878 4.33 2.36 -- 3.67 -- -- 0.291 -- 1.669 4458 -- --
473.35 1.01 4.39 -- 1.13 2.67 -- -- 0.0485 0.534 2.371 4257 -- --
599.92 1.14 4.49 1.4 -- -- -- -- -0.399 -- -- -- -- --
611.92 1.16 4.53 -- 0.797 -- -- -- -0.566 0.861 -- -- -- --
483.33 1.02 4.41 -- -- 2.93 -- -- -0.0604 -- 2.496 4506 -- --
651.59 1.19 4.52 -- -- -- -- -- -0.555 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.16 humidity 90 43200 > th dose independent rect. 21 2
2 280.32 humidity 90 43200 < th dose independent rect. 21 2
6 282.36 humidity 90 43200 > th dose independent rect. 18 6
12 282.90 humidity 90 43200 < th dose independent rect. 18 5
18 283.13 humidity 90 43200 > th dose dependent rect. 21 2
24 283.72 humidity 90 43200 > th dose dependent rect. 19 5
25 283.77 humidity 80 43200 < th dose independent rect. 13 1
30 284.09 wind 5 43200 < th dose independent rect. 11 1
33 284.29 humidity 80 43200 > th dose independent rect. 12 2
56 285.68 wind 5 43200 > th dose independent rect. 11 1
72 286.57 humidity 90 43200 < th dose independent sin 17 NA
90 287.54 humidity 90 43200 > th dose independent rect. 17 19
97 287.71 humidity 90 43200 < th dose independent rect. 9 17
98 287.71 humidity 90 43200 < th dose independent rect. 8 19
108 287.99 humidity 90 43200 > th dose independent sin 17 NA
137 288.52 humidity 90 43200 > th dose independent rect. 3 23
142 288.59 radiation 20 14400 < th dose dependent rect. 18 11
150 288.64 humidity 90 43200 > th dose independent rect. 8 19
158 288.72 humidity 90 43200 > th dose independent rect. 9 17
170 288.88 humidity 90 43200 > th dose independent rect. 8 23
175 288.96 humidity 90 43200 < th dose independent rect. 15 21
178 288.97 humidity 90 43200 < th dose independent rect. 5 23
184 289.03 humidity 90 43200 > th dose independent rect. 11 23
185 289.04 humidity 90 43200 > th dose independent no NA NA
197 289.14 humidity 90 43200 > th dose independent rect. 11 15
250 289.73 humidity 90 43200 > th dose dependent rect. 3 23
284 290.07 humidity 90 43200 < th dose independent rect. 18 1
287 290.09 humidity 90 43200 < th dose independent no NA NA
289 290.09 humidity 90 43200 > th dose dependent sin 16 NA
309 290.29 humidity 90 43200 > th dose dependent rect. 16 20
310 290.29 humidity 90 43200 > th dose dependent rect. 1 23
324 290.39 humidity 90 43200 > th dose dependent rect. 8 19
365 290.66 humidity 90 43200 > th dose dependent no NA NA
366 290.67 humidity 90 43200 > th dose dependent rect. 7 23
394 290.87 humidity 80 43200 > th dose independent rect. 11 7
406 290.95 humidity 90 43200 > th dose dependent rect. 11 15
441 291.23 humidity 90 43200 < th dose independent rect. 21 23
463 291.42 radiation 40 14400 < th dose dependent rect. 18 5
579 292.60 radiation 10 14400 < th dose independent rect. 16 14
653 293.56 humidity 90 43200 > th dose independent sin 6 NA
654 293.56 atmosphere 1005 43200 > th dose independent rect. 16 1
680 293.85 radiation 1 14400 < th dose dependent rect. 7 22
687 294.01 radiation 1 43200 < th dose dependent rect. 18 4
691 294.03 radiation 1 43200 < th dose dependent rect. 18 1
706 294.15 radiation 1 14400 < th dose dependent rect. 7 16
744 294.40 wind 3 43200 > th dose dependent rect. 11 1
748 294.43 humidity 90 43200 > th dose dependent sin 4 NA
770 294.74 atmosphere 1005 43200 < th dose independent rect. 16 1
800 295.04 humidity 90 43200 > th dose independent rect. 9 2
807 295.08 radiation 30 14400 < th dose independent rect. 15 17
818 295.20 humidity 90 43200 > th dose dependent rect. 3 8
876 295.75 radiation 10 14400 < th dose independent rect. 16 7
882 295.78 radiation 10 14400 < th dose independent rect. 16 5
927 296.19 humidity 90 43200 > th dose independent rect. 3 8
929 296.22 humidity 90 43200 < th dose independent rect. 9 2
935 296.24 humidity 90 43200 > th dose dependent rect. 2 12
959 296.39 radiation 1 14400 < th dose dependent rect. 18 21
990 296.77 humidity 80 43200 > th dose dependent rect. 10 1