Os08g0200500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0200500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.53 | 0.478 | 9.05 | 0.404 | 1.6 | 0.915 | -0.564 | -0.515 | 0.624 | 22.8 | 20.06 | 4108 | -- | -- |
| 103.82 | 0.475 | 9.03 | 0.475 | 1.6 | 1.06 | -0.552 | -- | 0.652 | 22.9 | 19.5 | 4154 | -- | -- |
| 104.84 | 0.477 | 9.05 | 0.418 | 1.6 | 0.899 | -- | -0.611 | 0.625 | 22.8 | 20.1 | 4015 | -- | -- |
| 104.39 | 0.476 | 9.01 | 0.525 | 1.58 | 1.29 | -- | -- | 0.69 | 22.8 | 18.4 | 3740 | -- | -- |
| 259.74 | 0.751 | 8.99 | 0.438 | -- | 1.32 | -- | 0.0579 | 0.605 | -- | 19.6 | 3737 | -- | -- |
| 122.13 | 0.518 | 8.96 | 1.1 | 1.62 | -- | -0.552 | -- | 0.917 | 22.9 | -- | -- | -- | -- |
| 123.42 | 0.52 | 8.96 | 1.12 | 1.62 | -- | -- | -- | 0.919 | 22.9 | -- | -- | -- | -- |
| 254.27 | 0.743 | 9.01 | 0.533 | -- | 1.45 | -- | -- | 0.676 | -- | 18.3 | 2368 | -- | -- |
| 102.55 | 0.472 | 9.05 | -- | 1.6 | 1.33 | -- | -- | 0.552 | 22.9 | 17.81 | 22571 | -- | -- |
| 286.86 | 0.791 | 8.92 | 1.16 | -- | -- | -- | -- | 0.93 | -- | -- | -- | -- | -- |
| 156.7 | 0.586 | 8.99 | -- | 1.63 | -- | -- | -- | 0.794 | 23 | -- | -- | -- | -- |
| 259.28 | 0.75 | 8.99 | -- | -- | 1.73 | -- | -- | 0.679 | -- | 18.38 | 2368 | -- | -- |
| 322.28 | 0.838 | 8.95 | -- | -- | -- | -- | -- | 0.802 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.94 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 2 | 89.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 5 | 89.81 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 6 | 90.01 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 9 | 90.24 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 12 | 90.61 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 13 | 90.63 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 14 | 90.72 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 22 | 91.61 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 40 | 92.46 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 63 | 93.06 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 69 | 93.26 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 70 | 93.31 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 73 | 93.44 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 81 | 93.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 87 | 93.78 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 90 | 93.82 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 108 | 94.27 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 112 | 94.29 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 121 | 94.39 | wind | 1.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 131 | 94.46 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 147 | 94.62 | wind | 7.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 155 | 94.67 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 166 | 94.75 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 171 | 94.81 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 183 | 94.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 186 | 94.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 189 | 94.92 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 203 | 95.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 206 | 95.03 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 213 | 95.07 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 219 | 95.10 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 220 | 95.10 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 221 | 95.10 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 222 | 95.11 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 229 | 95.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 231 | 95.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 232 | 95.15 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 240 | 95.18 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 248 | 95.24 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 270 | 95.31 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 283 | 95.34 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 306 | 95.41 | humidity | 70.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 311 | 95.42 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 341 | 95.48 | humidity | 70.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 384 | 95.56 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 387 | 95.57 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 17 |
| 453 | 95.67 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 462 | 95.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 470 | 95.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 474 | 95.70 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 477 | 95.70 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 486 | 95.71 | humidity | 70.0 | 43200 | < th | dose independent | sin | 20 | NA |
| 498 | 95.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 502 | 95.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 524 | 95.74 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 533 | 95.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 556 | 95.79 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 665 | 95.90 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 20 |
| 685 | 95.93 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 726 | 95.97 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 729 | 95.97 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 765 | 96.00 | humidity | 60.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 824 | 96.06 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 835 | 96.06 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 4 | 21 |
| 849 | 96.08 | humidity | 70.0 | 43200 | > th | dose independent | no | NA | NA |
| 850 | 96.08 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 851 | 96.08 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 888 | 96.11 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 957 | 96.16 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 987 | 96.19 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 9 |