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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0199800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0167) R2 : 0.0103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0764 (0.0351) R2dN8 : 0.0133 R2N8 : 0.0103
σ : 0.314
deviance : 45.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.07 0.301 3.28 -0.493 0.0878 1.87 0.374 -8.9 -0.0475 10.4 999.9 301 -- --
42.16 0.305 3.19 0.0469 0.0806 0.258 0.34 -- -0.048 10 999.9 301 -- --
41.59 0.3 3.28 -0.481 0.0942 1.87 -- -8.85 -0.0508 9.36 999.9 301 -- --
41.87 0.303 3.19 0.0961 0.0973 1.61 -- -- -0.0622 8.21 994.8 72 -- --
42.08 0.302 3.28 -0.459 -- 1.83 -- -8.66 -0.0473 -- 999.8 294 -- --
43.99 0.311 3.19 0.0924 0.0822 -- 0.355 -- -0.0654 10.2 -- -- -- --
44.43 0.312 3.19 0.105 0.0896 -- -- -- -0.0654 8.75 -- -- -- --
42.39 0.305 3.19 0.0969 -- 1.58 -- -- -0.0612 -- 994.8 72 -- --
42.11 0.304 3.19 -- 0.0979 1.62 -- -- -0.0729 8.13 994.8 72 -- --
44.88 0.313 3.19 0.105 -- -- -- -- -0.0647 -- -- -- -- --
44.72 0.313 3.19 -- 0.0899 -- -- -- -0.0771 8.67 -- -- -- --
42.64 0.305 3.19 -- -- 1.6 -- -- -0.0719 -- 994.8 70 -- --
45.18 0.314 3.19 -- -- -- -- -- -0.0764 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.87 atmosphere 995 10 > th dose independent rect. 3 23
3 40.28 atmosphere 1000 1440 > th dose independent rect. 24 1
10 40.46 atmosphere 1000 1440 < th dose independent rect. 23 3
15 40.50 atmosphere 1000 1440 < th dose independent rect. 1 1
44 40.68 atmosphere 1000 270 < th dose independent rect. 18 22
51 40.69 atmosphere 1000 720 > th dose independent rect. 21 14
52 40.69 atmosphere 1000 90 < th dose dependent rect. 20 21
63 40.75 atmosphere 1000 10 < th dose dependent rect. 15 20
78 40.80 atmosphere 1000 720 < th dose independent rect. 20 17
105 40.87 atmosphere 1000 90 < th dose independent rect. 4 22
106 40.87 atmosphere 1000 90 < th dose dependent rect. 4 22
117 40.90 atmosphere 1000 720 < th dose independent rect. 5 1
162 40.97 atmosphere 1000 1440 > th dose independent rect. 5 1
166 40.97 atmosphere 1000 270 < th dose independent rect. 11 22
167 40.97 atmosphere 1000 90 < th dose dependent rect. 4 13
172 40.98 atmosphere 1000 90 < th dose independent rect. 14 20
179 40.99 atmosphere 1000 90 < th dose dependent rect. 24 17
194 41.02 atmosphere 1000 90 < th dose dependent rect. 24 22
212 41.05 atmosphere 1000 90 < th dose independent rect. 24 23
213 41.05 atmosphere 1000 270 < th dose dependent rect. 1 15
269 41.10 atmosphere 995 720 > th dose independent rect. 23 16
270 41.10 atmosphere 1000 90 > th dose independent rect. 21 23
289 41.11 atmosphere 1000 90 < th dose dependent rect. 4 18
290 41.12 atmosphere 995 720 > th dose independent rect. 7 8
307 41.14 atmosphere 1000 270 < th dose independent no NA NA
319 41.15 atmosphere 1000 720 > th dose independent sin 8 NA
320 41.15 atmosphere 1000 720 < th dose independent sin 8 NA
326 41.15 atmosphere 1000 720 > th dose independent rect. 21 16
354 41.16 wind 5 14400 < th dose dependent rect. 11 1
362 41.17 atmosphere 1000 720 > th dose independent rect. 3 8
402 41.20 atmosphere 995 10 > th dose independent sin 4 NA
403 41.20 atmosphere 995 90 > th dose independent sin 5 NA
404 41.20 atmosphere 1000 270 > th dose independent no NA NA
406 41.20 atmosphere 1000 90 < th dose independent rect. 4 3
423 41.21 atmosphere 1000 90 < th dose dependent rect. 5 2
438 41.22 temperature 30 30 > th dose dependent rect. 15 20
450 41.23 atmosphere 1000 90 < th dose dependent no NA NA
451 41.23 wind 1 14400 > th dose dependent rect. 11 1
453 41.23 atmosphere 1000 1440 < th dose dependent rect. 5 1
507 41.26 atmosphere 1000 30 < th dose dependent rect. 9 23
532 41.27 atmosphere 1000 30 < th dose dependent rect. 7 23
723 41.38 temperature 30 1440 > th dose independent rect. 10 1
743 41.39 atmosphere 1000 90 < th dose independent rect. 4 13
796 41.42 temperature 30 1440 < th dose independent rect. 3 8
804 41.42 atmosphere 1000 90 < th dose independent rect. 4 19
813 41.42 atmosphere 1000 270 < th dose dependent sin 3 NA
853 41.44 temperature 30 1440 > th dose independent rect. 15 20
871 41.45 temperature 30 4320 < th dose independent rect. 21 13
877 41.45 temperature 30 1440 < th dose independent rect. 15 20
883 41.45 atmosphere 1010 30 < th dose dependent rect. 2 1
885 41.45 temperature 30 30 > th dose dependent rect. 15 3
898 41.46 temperature 30 1440 < th dose independent rect. 10 1
968 41.47 atmosphere 1000 90 < th dose dependent rect. 14 3