Os08g0198900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding WRKY domain containing protein.
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Os08g0198900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding WRKY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.84 | 0.546 | 7.21 | -0.113 | 0.984 | -3.01 | 0.567 | -1.34 | 0.517 | 4.15 | 0.9212 | 8660 | -- | -- |
| 136.02 | 0.543 | 7.23 | -0.326 | 1.01 | -2.83 | 0.618 | -- | 0.492 | 4 | 0.9699 | 8687 | -- | -- |
| 135.39 | 0.542 | 7.21 | -0.0719 | 0.999 | -2.95 | -- | -1.27 | 0.536 | 4.2 | 1.01 | 8665 | -- | -- |
| 136.22 | 0.544 | 7.23 | -0.353 | 1.02 | -2.86 | -- | -- | 0.464 | 4.07 | 1.02 | 8685 | -- | -- |
| 184.14 | 0.632 | 7.21 | -0.0648 | -- | -2.92 | -- | -1.25 | 0.536 | -- | 1.01 | 8594 | -- | -- |
| 249.09 | 0.74 | 7.1 | 0.305 | 1.01 | -- | 0.727 | -- | 1.06 | 4.15 | -- | -- | -- | -- |
| 250.42 | 0.741 | 7.1 | 0.297 | 1.02 | -- | -- | -- | 1.06 | 4.35 | -- | -- | -- | -- |
| 186.4 | 0.636 | 7.25 | -0.344 | -- | -2.86 | -- | -- | 0.472 | -- | 1.01 | 8598 | -- | -- |
| 139.3 | 0.55 | 7.23 | -- | 1.02 | -2.77 | -- | -- | 0.498 | 4.13 | 1.03 | 8683 | -- | -- |
| 306.12 | 0.818 | 7.11 | 0.338 | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
| 252.75 | 0.744 | 7.11 | -- | 1.02 | -- | -- | -- | 1.02 | 4.34 | -- | -- | -- | -- |
| 189 | 0.64 | 7.23 | -- | -- | -2.75 | -- | -- | 0.515 | -- | 1.06 | 8598 | -- | -- |
| 309.13 | 0.821 | 7.12 | -- | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.46 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 134.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 3 | 134.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 9 | 135.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 17 | 136.38 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 27 | 136.51 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 30 | 137.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 32 | 137.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 44 | 137.17 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 46 | 137.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 49 | 137.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 61 | 137.50 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 66 | 137.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 86 | 137.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 17 |
| 92 | 137.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 93 | 137.62 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 242 | 138.11 | temperature | 10 | 4320 | > th | dose dependent | sin | 4 | NA |
| 244 | 138.12 | temperature | 30 | 4320 | < th | dose dependent | sin | 4 | NA |
| 350 | 138.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 22 |
| 361 | 138.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 12 | 22 |
| 380 | 138.50 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 412 | 138.54 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 413 | 138.54 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 415 | 138.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 416 | 138.54 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 485 | 138.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 487 | 138.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 509 | 138.68 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 510 | 138.68 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 985 | 139.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |