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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0198000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA-binding WRKY domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0463) R2 : 0.00119
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0719 (0.0975) R2dN8 : 0.00154 R2N8 : 0.00119
σ : 0.872
deviance : 349.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.76 0.852 3.12 0.337 0.102 -0.829 0.804 -2.03 0.167 18.9 20.3 1739 -- --
335.97 0.854 3.05 0.696 0.0898 -0.544 0.707 -- 0.262 18.9 20.95 1749 -- --
330.41 0.847 3.12 0.318 0.102 -0.788 -- -1.96 0.167 18.5 20.43 1710 -- --
337.08 0.855 3.06 0.682 0.0987 -0.511 -- -- 0.259 18.7 21.1 1839 -- --
330.94 0.847 3.12 0.318 -- -0.785 -- -1.94 0.165 -- 20.45 1707 -- --
342.58 0.868 3.09 0.457 0.0834 -- 0.663 -- 0.121 18.8 -- -- -- --
343.69 0.868 3.09 0.446 0.087 -- -- -- 0.123 18.2 -- -- -- --
337.6 0.856 3.06 0.677 -- -0.508 -- -- 0.257 -- 21.1 1838 -- --
342.23 0.866 3.08 -- 0.135 -0.331 -- -- 0.163 14.6 22.4 1766 -- --
344.09 0.867 3.09 0.444 -- -- -- -- 0.121 -- -- -- -- --
348.94 0.874 3.1 -- 0.0809 -- -- -- 0.0733 18.5 -- -- -- --
343.21 0.866 3.08 -- -- -0.297 -- -- 0.151 -- 22.38 1897 -- --
349.28 0.872 3.1 -- -- -- -- -- 0.0719 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 319.98 humidity 60.0 10 < th dose independent rect. 17 2
16 320.16 humidity 60.0 10 < th dose dependent rect. 18 1
31 322.10 humidity 50.0 90 < th dose dependent rect. 17 1
48 322.16 humidity 50.0 90 < th dose independent rect. 17 1
96 322.68 temperature 30.0 10 > th dose independent rect. 13 21
99 322.87 temperature 30.0 10 > th dose independent rect. 13 6
208 325.19 temperature 30.0 10 > th dose dependent rect. 17 2
242 326.61 radiation 10.0 90 > th dose dependent rect. 17 1
257 326.95 temperature 20.0 30 < th dose independent rect. 2 2
264 327.28 wind 5.0 90 > th dose independent rect. 18 16
284 327.46 temperature 30.0 30 > th dose independent rect. 17 1
286 327.62 temperature 25.0 270 < th dose dependent rect. 23 21
287 327.63 wind 5.0 90 > th dose dependent rect. 18 16
288 327.69 radiation 10.0 90 > th dose independent rect. 17 1
301 327.71 temperature 25.0 90 < th dose dependent rect. 1 19
317 327.78 humidity 50.0 90 < th dose independent rect. 17 22
318 327.82 temperature 25.0 10 < th dose dependent rect. 2 19
319 327.83 temperature 25.0 10 < th dose dependent rect. 24 21
320 327.84 radiation 1.0 10 > th dose dependent rect. 18 1
331 327.93 temperature 30.0 90 > th dose dependent rect. 17 1
332 327.95 humidity 50.0 90 < th dose dependent rect. 17 20
344 328.18 humidity 50.0 90 < th dose dependent rect. 17 22
354 328.32 humidity 50.0 90 < th dose independent sin 8 NA
377 328.42 temperature 30.0 10 > th dose independent sin 13 NA
415 328.67 temperature 20.0 1440 > th dose independent rect. 2 1
438 328.86 temperature 25.0 10 < th dose dependent rect. 8 2
441 328.93 temperature 25.0 720 < th dose dependent rect. 8 17
442 328.94 wind 5.0 90 > th dose independent rect. 8 1
443 328.96 temperature 20.0 1440 < th dose independent rect. 2 1
447 329.02 temperature 20.0 30 < th dose independent rect. 2 19
465 329.09 temperature 25.0 720 < th dose dependent sin 19 NA
473 329.21 temperature 30.0 10 < th dose independent sin 13 NA
491 329.37 precipitation 0.1 4320 > th dose dependent rect. 17 1
494 329.43 wind 1.0 90 < th dose dependent rect. 13 2
499 329.46 wind 7.0 90 > th dose independent rect. 1 8
505 329.53 wind 7.0 90 > th dose dependent rect. 1 8
559 329.67 temperature 25.0 10 < th dose dependent rect. 2 2
561 329.69 wind 7.0 90 > th dose dependent rect. 8 1
593 329.83 humidity 60.0 10 < th dose independent sin 11 NA
599 329.86 temperature 20.0 1440 > th dose independent rect. 1 21
601 329.86 temperature 25.0 270 < th dose dependent rect. 23 11
636 330.00 humidity 50.0 90 < th dose dependent sin 9 NA
644 330.07 wind 5.0 90 > th dose independent rect. 22 12
645 330.07 temperature 10.0 720 > th dose dependent rect. 18 7
654 330.15 wind 1.0 270 < th dose independent rect. 13 1
655 330.15 temperature 20.0 1440 < th dose independent rect. 2 20
667 330.27 temperature 30.0 30 > th dose dependent sin 11 NA
669 330.28 temperature 25.0 270 < th dose dependent rect. 13 21
692 330.33 precipitation 0.1 4320 > th dose independent rect. 17 1
713 330.37 temperature 25.0 720 < th dose dependent rect. 9 12
714 330.38 temperature 30.0 10 > th dose independent rect. 14 1
743 330.43 temperature 25.0 10 < th dose dependent rect. 2 9
751 330.46 temperature 25.0 90 < th dose dependent rect. 1 10
814 330.67 humidity 50.0 90 > th dose independent sin 9 NA
817 330.67 temperature 25.0 30 < th dose dependent rect. 6 22
831 330.73 temperature 25.0 720 < th dose dependent rect. 13 8
835 330.73 temperature 25.0 270 < th dose dependent rect. 5 23
853 330.79 temperature 25.0 720 < th dose dependent rect. 15 4
858 330.82 temperature 25.0 10 < th dose dependent rect. 24 11
873 330.87 temperature 20.0 4320 < th dose independent rect. 19 2
893 330.95 temperature 20.0 1440 > th dose independent rect. 18 14
912 331.00 radiation 10.0 10 < th dose dependent rect. 9 3
924 331.04 atmosphere 1000.0 10 > th dose independent rect. 17 11
941 331.06 temperature 20.0 1440 > th dose independent rect. 15 17
945 331.07 temperature 20.0 1440 > th dose independent rect. 1 7
971 331.08 temperature 20.0 1440 > th dose independent rect. 18 23
972 331.08 temperature 25.0 10 < th dose dependent rect. 2 12
982 331.10 temperature 25.0 10 < th dose dependent sin 3 NA
995 331.11 temperature 25.0 270 < th dose dependent rect. 9 23
999 331.12 temperature 25.0 270 < th dose dependent no NA NA