Os08g0197700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Luminal binding protein 5 precursor (BiP 5) (78 kDa glucose-regulated protein homolog 5) (GRP 78-5).
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Os08g0197700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Luminal binding protein 5 precursor (BiP 5) (78 kDa glucose-regulated protein homolog 5) (GRP 78-5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.66 | 0.447 | 3.41 | -0.126 | 0.0213 | 0.836 | -0.98 | -1.25 | -0.0212 | 6.91 | 998.9 | 1778 | -- | -- |
| 91.05 | 0.444 | 3.4 | -0.0554 | 0.0308 | 0.737 | -0.96 | -- | -0.0119 | 6.94 | 998.6 | 1836 | -- | -- |
| 92.41 | 0.448 | 3.4 | -0.129 | 0.113 | 0.842 | -- | -1.21 | -0.0157 | 12.2 | 999 | 1805 | -- | -- |
| 92.73 | 0.448 | 3.39 | -0.0764 | 0.112 | 0.692 | -- | -- | -0.0188 | 12.5 | 998.5 | 1981 | -- | -- |
| 93.15 | 0.45 | 3.41 | -0.152 | -- | 0.872 | -- | -1.42 | -0.0179 | -- | 998.9 | 1754 | -- | -- |
| 96.61 | 0.461 | 3.4 | 0.00782 | 0.0297 | -- | -0.997 | -- | -0.0555 | 7.15 | -- | -- | -- | -- |
| 98.36 | 0.464 | 3.4 | -0.00771 | 0.122 | -- | -- | -- | -0.0508 | 12.5 | -- | -- | -- | -- |
| 93.55 | 0.45 | 3.4 | -0.0841 | -- | 0.702 | -- | -- | -0.0207 | -- | 998.5 | 1981 | -- | -- |
| 92.89 | 0.449 | 3.39 | -- | 0.115 | 0.677 | -- | -- | -0.0113 | 12.5 | 998.5 | 1981 | -- | -- |
| 99.29 | 0.466 | 3.4 | -0.0119 | -- | -- | -- | -- | -0.0529 | -- | -- | -- | -- | -- |
| 98.36 | 0.464 | 3.4 | -- | 0.122 | -- | -- | -- | -0.05 | 12.5 | -- | -- | -- | -- |
| 93.73 | 0.451 | 3.4 | -- | -- | 0.682 | -- | -- | -0.0125 | -- | 998.5 | 1981 | -- | -- |
| 99.29 | 0.465 | 3.4 | -- | -- | -- | -- | -- | -0.0516 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.66 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 17 | 2 |
| 2 | 88.69 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 17 | 2 |
| 4 | 88.79 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 7 | 88.84 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 16 | 3 |
| 9 | 88.86 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 22 | 89.14 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 24 | 89.15 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 16 | 1 |
| 28 | 89.22 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 48 | 89.50 | precipitation | 1e-01 | 270 | > th | dose dependent | sin | 20 | NA |
| 66 | 89.82 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 70 | 89.86 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 116 | 90.13 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 8 | 10 |
| 139 | 90.24 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 140 | 90.24 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 159 | 90.30 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 161 | 90.30 | atmosphere | 1e+03 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 182 | 90.34 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 193 | 90.37 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 271 | 90.51 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 13 | 5 |
| 278 | 90.52 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 280 | 90.53 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 282 | 90.54 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 295 | 90.58 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 331 | 90.68 | precipitation | 1e-01 | 270 | < th | dose independent | sin | 21 | NA |
| 334 | 90.68 | precipitation | 1e-01 | 270 | < th | dose dependent | sin | 21 | NA |
| 356 | 90.79 | atmosphere | 1e+03 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 392 | 90.87 | atmosphere | 1e+03 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 397 | 90.89 | atmosphere | 1e+03 | 1440 | < th | dose independent | sin | 8 | NA |
| 398 | 90.89 | wind | 9e+00 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 424 | 90.91 | wind | 9e+00 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 431 | 90.92 | atmosphere | 1e+03 | 1440 | > th | dose independent | sin | 8 | NA |
| 577 | 91.09 | wind | 9e+00 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 642 | 91.19 | atmosphere | 1e+03 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 648 | 91.21 | precipitation | 1e-01 | 270 | > th | dose independent | sin | 20 | NA |
| 718 | 91.29 | atmosphere | 1e+03 | 720 | < th | dose dependent | sin | 1 | NA |
| 734 | 91.31 | atmosphere | 1e+03 | 720 | < th | dose dependent | rect. | 8 | 9 |
| 771 | 91.35 | atmosphere | 1e+03 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 816 | 91.40 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 820 | 91.40 | atmosphere | 1e+03 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 830 | 91.41 | atmosphere | 1e+03 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 849 | 91.43 | humidity | 9e+01 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 854 | 91.44 | atmosphere | 1e+03 | 1440 | < th | dose independent | no | NA | NA |
| 862 | 91.44 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 863 | 91.44 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 877 | 91.45 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 892 | 91.46 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 897 | 91.47 | atmosphere | 1e+03 | 1440 | > th | dose independent | no | NA | NA |
| 907 | 91.47 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 941 | 91.49 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 943 | 91.49 | atmosphere | 1e+03 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 944 | 91.49 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 990 | 91.52 | atmosphere | 1e+03 | 1440 | < th | dose independent | rect. | 19 | 4 |