FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0197400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0261) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.603 (0.0699) R2dC : 0.112 R2C : 0.219
β3 : -1.2 (0.101) R2dE : 0.211 R2E : 0.314
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.055) R2dN8 : 0.00846 R2N8 : -0.00174
σ : 0.488
deviance : 109.69
__
_____
C
peak time of C : 20.9
E
wheather : temperature
threshold : 29.9
memory length : 528
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.2 0.475 3.43 0.0121 0.656 -1.54 0.993 4.3 0.115 21.1 29.9 429 -- --
103.86 0.475 3.38 0.404 0.678 -1.07 0.869 -- 0.17 21.1 29.8 414 -- --
105.55 0.478 3.43 -0.0199 0.635 -1.58 -- 4.18 0.119 21.1 29.8 436 -- --
106.43 0.48 3.38 0.369 0.654 -1.11 -- -- 0.158 20.9 29.9 452 -- --
122.51 0.516 3.41 0.00126 -- -1.81 -- 3.24 0.0767 -- 29.7 558 -- --
127 0.528 3.4 0.568 0.989 -- 1.39 -- 0.115 19.9 -- -- -- --
132.62 0.539 3.4 0.532 0.991 -- -- -- 0.117 19.8 -- -- -- --
123.43 0.517 3.39 0.319 -- -1.43 -- -- 0.0615 -- 29.4 543 -- --
109.69 0.488 3.39 -- 0.603 -1.2 -- -- 0.116 20.9 29.9 528 -- --
185.71 0.637 3.38 0.52 -- -- -- -- 0.103 -- -- -- -- --
140.07 0.554 3.42 -- 0.987 -- -- -- 0.0574 19.8 -- -- -- --
126.09 0.523 3.4 -- -- -1.45 -- -- 0.0312 -- 29.4 546 -- --
192.83 0.648 3.39 -- -- -- -- -- 0.045 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.46 temperature 20 10 > th dose dependent sin 16 NA
2 100.54 temperature 20 270 > th dose dependent sin 18 NA
4 100.68 temperature 20 90 > th dose dependent sin 16 NA
15 101.43 temperature 30 90 < th dose dependent sin 17 NA
18 101.58 temperature 20 270 > th dose dependent rect. 11 12
19 101.59 temperature 30 270 < th dose dependent rect. 10 11
28 101.82 temperature 30 720 < th dose independent rect. 10 3
45 102.29 temperature 30 720 > th dose independent rect. 10 3
72 102.95 temperature 30 720 > th dose independent rect. 10 5
76 102.98 temperature 30 720 < th dose independent rect. 1 12
80 103.09 temperature 30 720 < th dose independent rect. 5 8
83 103.11 temperature 30 720 < th dose independent rect. 24 14
106 103.19 temperature 30 720 < th dose independent rect. 19 18
118 103.31 temperature 30 720 > th dose dependent rect. 11 2
121 103.34 temperature 30 720 < th dose independent rect. 3 10
148 103.47 temperature 25 270 > th dose dependent rect. 11 20
172 103.55 temperature 25 270 > th dose dependent rect. 11 18
209 103.75 temperature 30 720 < th dose independent rect. 21 16
236 104.01 temperature 20 720 > th dose dependent rect. 8 8
257 104.06 temperature 30 720 > th dose independent sin 5 NA
290 104.31 temperature 30 720 < th dose independent sin 6 NA
309 104.42 temperature 30 720 > th dose dependent sin 7 NA
465 105.03 temperature 25 720 > th dose dependent sin 3 NA
522 105.34 temperature 20 720 > th dose dependent sin 0 NA
592 105.65 temperature 10 720 > th dose dependent rect. 4 14
634 105.75 temperature 30 90 < th dose dependent rect. 11 18
643 105.80 temperature 10 720 > th dose dependent sin 0 NA
681 105.89 temperature 30 720 < th dose independent rect. 16 21
701 105.98 temperature 30 90 < th dose dependent rect. 15 8
750 106.08 temperature 25 10 < th dose dependent rect. 11 11
787 106.21 temperature 25 270 > th dose dependent rect. 24 22
831 106.32 temperature 30 270 < th dose independent sin 17 NA
837 106.32 temperature 25 270 > th dose dependent rect. 4 18
838 106.33 temperature 20 10 > th dose dependent rect. 13 9
848 106.35 temperature 25 270 > th dose dependent rect. 4 22
849 106.36 temperature 30 270 > th dose independent sin 19 NA
862 106.38 temperature 25 270 > th dose dependent no NA NA
978 106.59 temperature 20 10 > th dose dependent rect. 17 10
980 106.59 temperature 30 90 < th dose dependent rect. 13 16
998 106.63 temperature 25 270 > th dose dependent rect. 15 23