Os08g0197200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0197200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.82 | 0.492 | 3.94 | 2.39 | 1.12 | 0.845 | 2.6 | 3.15 | 0.7 | 19.6 | 5.209 | 1266 | -- | -- |
| 115.46 | 0.5 | 4.03 | 1.73 | 1.01 | 0.744 | 2.72 | -- | 0.51 | 20.1 | 23.7 | 1779 | -- | -- |
| 118.2 | 0.506 | 3.92 | 2.42 | 0.928 | 0.861 | -- | 4.03 | 0.684 | 20.1 | 17.12 | 620 | -- | -- |
| 128.35 | 0.528 | 4.02 | 1.67 | 0.68 | 1.13 | -- | -- | 0.544 | 20.8 | 23.9 | 499 | -- | -- |
| 146.71 | 0.564 | 3.93 | 2.34 | -- | 1.33 | -- | 3.89 | 0.625 | -- | 18.91 | 610 | -- | -- |
| 130.5 | 0.536 | 4 | 1.98 | 1.12 | -- | 2.63 | -- | 0.677 | 20 | -- | -- | -- | -- |
| 150.9 | 0.575 | 4 | 1.91 | 1.12 | -- | -- | -- | 0.681 | 19.9 | -- | -- | -- | -- |
| 147.48 | 0.566 | 4 | 1.58 | -- | 1.58 | -- | -- | 0.492 | -- | 24.17 | 589 | -- | -- |
| 198.8 | 0.657 | 4.07 | -- | 0.583 | 1.47 | -- | -- | 0.294 | 20.5 | 22.56 | 613 | -- | -- |
| 219.59 | 0.692 | 3.97 | 1.9 | -- | -- | -- | -- | 0.665 | -- | -- | -- | -- | -- |
| 247.34 | 0.736 | 4.04 | -- | 1.11 | -- | -- | -- | 0.468 | 20 | -- | -- | -- | -- |
| 210.39 | 0.676 | 4.05 | -- | -- | 1.88 | -- | -- | 0.276 | -- | 23.74 | 621 | -- | -- |
| 314.84 | 0.828 | 4.01 | -- | -- | -- | -- | -- | 0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.76 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 8 |
| 2 | 105.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 3 | 105.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 9 |
| 5 | 106.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 17 |
| 9 | 106.40 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 9 |
| 10 | 106.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 13 | 106.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 15 | 106.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 22 | 106.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 24 | 106.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 54 | 106.95 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 56 | 106.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 58 | 106.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 113 | 107.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 124 | 107.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 132 | 107.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 135 | 107.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 140 | 107.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 166 | 107.54 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 371 | 108.13 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 506 | 108.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 555 | 108.64 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 586 | 108.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 587 | 108.73 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 9 |
| 630 | 108.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 631 | 108.84 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 648 | 108.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 678 | 108.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 733 | 109.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 753 | 109.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 793 | 109.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 842 | 109.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 944 | 109.54 | temperature | 20 | 10 | > th | dose dependent | sin | 16 | NA |