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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0196900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0292) R2 : 0.117
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.504 (0.0697) R2dC : 0.102 R2C : 0.097
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.174 (0.0613) R2dN8 : 0.0201 R2N8 : 0.0156
σ : 0.549
deviance : 137.95
__
_____
C
peak time of C : 11
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.65 0.529 3.39 0.129 0.608 1.21 0.536 0.56 -0.0877 11.4 21.18 6 -- --
126.9 0.529 3.39 0.161 0.599 1.08 0.447 -- -0.0836 11.3 21.18 6 -- --
127.73 0.53 3.39 0.175 0.599 1.16 -- 0.182 -0.0831 11.4 21.04 5 -- --
127.63 0.53 3.38 0.181 0.612 1.03 -- -- -0.0718 11.4 21.8 6 -- --
148.55 0.568 3.41 0.124 -- 1.18 -- 0.415 -0.13 -- 19.27 5 -- --
136.76 0.548 3.41 -0.0236 0.507 -- 0.53 -- -0.176 11 -- -- -- --
137.95 0.55 3.41 -0.00186 0.504 -- -- -- -0.174 11 -- -- -- --
148.36 0.567 3.41 0.126 -- 0.966 -- -- -0.126 -- 19.74 3 -- --
128.43 0.531 3.39 -- 0.602 0.945 -- -- -0.0984 11.3 21.8 7 -- --
153.74 0.579 3.42 -0.0131 -- -- -- -- -0.178 -- -- -- -- --
137.95 0.549 3.41 -- 0.504 -- -- -- -0.174 11 -- -- -- --
148.73 0.568 3.41 -- -- 0.842 -- -- -0.139 -- 20.09 3 -- --
153.75 0.579 3.42 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.27 temperature 20.0 10 < th dose dependent rect. 2 1
4 121.98 precipitation 0.1 720 > th dose dependent rect. 17 1
5 122.06 temperature 20.0 270 > th dose independent rect. 13 18
8 122.56 atmosphere 1000.0 1440 > th dose independent rect. 5 1
9 122.56 atmosphere 1000.0 1440 < th dose independent rect. 3 3
12 122.62 atmosphere 1000.0 1440 < th dose dependent rect. 3 2
13 122.62 temperature 20.0 10 < th dose dependent rect. 24 3
24 122.82 atmosphere 1000.0 1440 > th dose independent rect. 3 3
34 122.90 atmosphere 1000.0 1440 > th dose independent rect. 3 1
70 123.46 temperature 20.0 30 < th dose independent rect. 24 2
133 124.39 temperature 20.0 10 > th dose independent rect. 12 22
169 124.85 temperature 20.0 270 > th dose independent rect. 23 8
178 125.02 precipitation 0.1 14400 > th dose dependent rect. 21 2
181 125.09 atmosphere 1000.0 1440 < th dose independent rect. 7 2
194 125.26 precipitation 0.1 14400 > th dose dependent rect. 20 6
197 125.27 atmosphere 1000.0 1440 < th dose dependent rect. 7 2
206 125.33 precipitation 0.1 720 > th dose independent rect. 17 1
216 125.46 humidity 50.0 30 > th dose dependent rect. 3 7
217 125.47 precipitation 0.1 14400 > th dose independent rect. 21 1
219 125.49 precipitation 0.1 14400 < th dose independent rect. 21 1
223 125.49 atmosphere 1000.0 1440 < th dose dependent rect. 9 1
224 125.49 precipitation 0.1 14400 < th dose dependent rect. 21 1
233 125.53 temperature 20.0 10 > th dose independent rect. 16 18
257 125.72 temperature 20.0 270 > th dose independent rect. 24 22
260 125.75 humidity 70.0 30 > th dose independent rect. 3 8
265 125.79 atmosphere 1000.0 1440 > th dose independent rect. 9 1
273 125.83 radiation 40.0 30 < th dose independent rect. 3 7
283 125.91 temperature 30.0 90 < th dose dependent rect. 19 8
309 126.08 temperature 25.0 720 < th dose dependent rect. 17 9
311 126.09 precipitation 0.1 14400 > th dose independent rect. 20 5
313 126.10 precipitation 0.1 14400 < th dose independent rect. 20 5
314 126.10 precipitation 0.1 14400 < th dose dependent rect. 20 5
316 126.12 temperature 20.0 10 > th dose independent rect. 3 7
322 126.14 temperature 10.0 270 > th dose dependent rect. 11 22
344 126.31 temperature 20.0 10 > th dose independent rect. 16 15
351 126.33 precipitation 0.1 720 > th dose dependent rect. 6 12
359 126.39 temperature 30.0 10 < th dose independent rect. 3 7
377 126.44 temperature 20.0 10 > th dose independent rect. 3 19
384 126.46 temperature 10.0 270 > th dose dependent rect. 13 18
397 126.54 temperature 20.0 10 > th dose independent rect. 3 17
418 126.70 temperature 20.0 10 > th dose independent rect. 14 17
419 126.70 wind 9.0 43200 > th dose dependent rect. 16 15
421 126.71 temperature 30.0 30 < th dose dependent rect. 10 17
424 126.73 atmosphere 1000.0 1440 > th dose independent rect. 11 1
429 126.74 wind 9.0 43200 > th dose independent rect. 16 16
434 126.76 temperature 25.0 720 < th dose dependent sin 15 NA
436 126.76 temperature 25.0 720 < th dose dependent rect. 10 16
447 126.79 humidity 60.0 14400 < th dose independent rect. 18 14
455 126.82 wind 9.0 4320 > th dose independent rect. 17 12
458 126.83 humidity 60.0 14400 > th dose independent rect. 18 10
467 126.85 precipitation 0.1 720 > th dose dependent rect. 9 9
482 126.89 humidity 60.0 14400 < th dose independent rect. 18 3
496 126.90 wind 9.0 4320 > th dose dependent rect. 17 12
498 126.91 humidity 60.0 14400 > th dose independent rect. 18 14
511 126.95 wind 9.0 43200 < th dose independent rect. 16 16
517 126.98 humidity 60.0 14400 > th dose independent rect. 18 6
523 126.99 humidity 60.0 14400 > th dose independent rect. 18 4
534 127.02 wind 9.0 4320 < th dose independent rect. 17 12
545 127.03 radiation 40.0 10 < th dose dependent rect. 3 7
550 127.05 wind 9.0 4320 < th dose independent rect. 17 14
551 127.05 wind 9.0 43200 > th dose dependent rect. 16 11
556 127.07 wind 9.0 43200 > th dose dependent rect. 16 8
560 127.09 temperature 20.0 10 > th dose independent rect. 1 9
583 127.13 precipitation 0.1 720 > th dose dependent rect. 15 4
589 127.14 wind 9.0 10 < th dose independent rect. 3 7
590 127.14 temperature 10.0 10 > th dose independent rect. 3 7
593 127.14 atmosphere 995.0 10 > th dose independent rect. 3 7
594 127.14 atmosphere 1015.0 10 < th dose independent rect. 3 7
597 127.14 temperature 10.0 10 > th dose independent rect. 10 17
599 127.15 precipitation 0.1 720 > th dose independent rect. 16 3
607 127.16 temperature 20.0 10 > th dose independent rect. 3 23
609 127.16 temperature 15.0 10 > th dose dependent rect. 12 22
618 127.19 wind 9.0 4320 < th dose independent rect. 17 3
622 127.19 temperature 10.0 720 > th dose dependent rect. 16 15
631 127.21 wind 9.0 4320 < th dose independent rect. 17 5
663 127.25 temperature 25.0 720 < th dose dependent rect. 17 5
680 127.28 temperature 10.0 720 > th dose dependent rect. 16 8
701 127.33 precipitation 0.1 10 < th dose independent rect. 10 17
704 127.33 precipitation 0.1 10 < th dose dependent rect. 10 17
714 127.35 radiation 10.0 4320 > th dose dependent rect. 5 2
729 127.36 wind 9.0 4320 > th dose independent rect. 17 5
731 127.37 temperature 25.0 720 < th dose dependent rect. 19 2
739 127.38 atmosphere 1000.0 1440 < th dose dependent rect. 11 1
751 127.40 humidity 60.0 14400 < th dose dependent rect. 18 1
763 127.41 wind 9.0 4320 > th dose dependent rect. 17 4
770 127.42 wind 9.0 4320 < th dose independent rect. 17 9
781 127.43 wind 9.0 30 < th dose dependent rect. 3 7
790 127.45 temperature 25.0 1440 < th dose dependent rect. 21 1
832 127.51 temperature 20.0 10 < th dose dependent rect. 1 23
848 127.55 temperature 20.0 10 > th dose independent rect. 24 22
849 127.55 temperature 10.0 1440 > th dose dependent rect. 21 1
854 127.56 wind 5.0 43200 > th dose independent rect. 23 1
863 127.57 wind 9.0 43200 < th dose independent rect. 17 7
879 127.58 atmosphere 995.0 10 > th dose independent rect. 10 17
881 127.58 temperature 10.0 10 > th dose dependent rect. 3 7
906 127.61 humidity 50.0 14400 < th dose dependent rect. 17 17
908 127.62 wind 9.0 30 < th dose independent rect. 10 17
909 127.62 wind 9.0 4320 > th dose dependent rect. 17 2
914 127.63 precipitation 0.1 30 < th dose independent rect. 3 7
918 127.63 precipitation 0.1 30 < th dose dependent rect. 3 7
926 127.64 humidity 50.0 14400 < th dose dependent rect. 16 19
935 127.65 temperature 20.0 10 < th dose dependent rect. 11 20
937 127.66 radiation 10.0 4320 > th dose independent rect. 5 2
954 127.66 temperature 20.0 10 < th dose dependent rect. 5 23
959 127.67 temperature 10.0 720 > th dose dependent sin 13 NA
999 127.71 humidity 60.0 14400 < th dose dependent rect. 17 3