Os08g0196200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os08g0196200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.76 | 0.252 | 8.75 | 2.13 | 0.142 | -0.637 | -0.3 | -2.17 | 0.489 | 18.3 | 25.81 | 4546 | -- | -- |
| 32.6 | 0.266 | 8.83 | 1.69 | 0.144 | -0.42 | -0.335 | -- | 0.4 | 18.2 | 34.25 | 5407 | -- | -- |
| 28.95 | 0.251 | 8.75 | 2.14 | 0.141 | -0.629 | -- | -2.18 | 0.492 | 18 | 25.8 | 4442 | -- | -- |
| 32.83 | 0.267 | 8.83 | 1.7 | 0.14 | -0.424 | -- | -- | 0.395 | 17.7 | 35.66 | 5382 | -- | -- |
| 30 | 0.255 | 8.75 | 2.13 | -- | -0.623 | -- | -2.15 | 0.49 | -- | 25.99 | 4582 | -- | -- |
| 35.57 | 0.28 | 8.81 | 1.89 | 0.134 | -- | -0.327 | -- | 0.48 | 18.6 | -- | -- | -- | -- |
| 35.84 | 0.28 | 8.81 | 1.89 | 0.133 | -- | -- | -- | 0.479 | 18.3 | -- | -- | -- | -- |
| 33.69 | 0.27 | 8.83 | 1.68 | -- | -0.426 | -- | -- | 0.377 | -- | 40.7 | 6324 | -- | -- |
| 38.71 | 0.29 | 8.96 | -- | 0.141 | -1.54 | -- | -- | -0.192 | 17.5 | 36.91 | 47520 | -- | -- |
| 36.76 | 0.283 | 8.81 | 1.89 | -- | -- | -- | -- | 0.476 | -- | -- | -- | -- | -- |
| 130.46 | 0.534 | 8.86 | -- | 0.11 | -- | -- | -- | 0.268 | 19.2 | -- | -- | -- | -- |
| 39.75 | 0.294 | 8.96 | -- | -- | -1.54 | -- | -- | -0.194 | -- | 42.46 | 47520 | -- | -- |
| 131.11 | 0.534 | 8.85 | -- | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 27.58 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 3 | 27.59 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 5 | 27.61 | temperature | 20 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 6 | 27.62 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 10 | 27.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 11 | 27.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 12 | 27.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 20 | 27.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 44 | 27.68 | temperature | 25 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 46 | 27.69 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 54 | 27.70 | temperature | 20 | 43200 | < th | dose independent | sin | 1 | NA |
| 69 | 27.71 | temperature | 20 | 43200 | > th | dose independent | sin | 1 | NA |
| 81 | 27.71 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 84 | 27.72 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 85 | 27.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 90 | 27.72 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 91 | 27.72 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 102 | 27.72 | temperature | 15 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 108 | 27.73 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 145 | 27.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 174 | 27.76 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 264 | 27.78 | temperature | 15 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 287 | 27.78 | temperature | 20 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 498 | 27.82 | temperature | 20 | 43200 | < th | dose dependent | sin | 9 | NA |
| 537 | 27.83 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 540 | 27.83 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 543 | 27.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 562 | 27.83 | temperature | 20 | 43200 | < th | dose dependent | sin | 7 | NA |
| 617 | 27.84 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 632 | 27.84 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 698 | 27.85 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 699 | 27.85 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 721 | 27.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 787 | 27.86 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 789 | 27.86 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 801 | 27.86 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 810 | 27.86 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 861 | 27.87 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 876 | 27.87 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 887 | 27.87 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 955 | 27.88 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 997 | 27.88 | temperature | 20 | 43200 | > th | dose independent | rect. | 13 | 23 |