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Os08g0192400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : YL1 nuclear family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.06 (0.0222) R2 : 0.625
β1 : 1.18 (0.0812) R2dD : 0.181 R2D : 0.171
β2 : 1.34 (0.0574) R2dC : 0.452 R2C : 0.44
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0355 (0.0473) R2dN8 : 0.000621 R2N8 : 0.0038
σ : 0.417
deviance : 79.23
__
_____
C
peak time of C : 16.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.24 0.402 8.18 0.333 1.32 0.399 0.144 -6.22 -0.0902 17 30.52 4120 -- --
75.15 0.404 8.06 1.27 1.31 -0.314 0.177 -- -0.0452 17 27.52 2687 -- --
73.28 0.399 8.17 0.369 1.31 0.375 -- -6.03 -0.0875 17 30.74 4122 -- --
75.02 0.403 8.07 1.27 1.32 -0.335 -- -- -0.105 17 30.96 2651 -- --
162.68 0.594 8.25 -0.421 -- 0.802 -- -10.4 -0.133 -- 33.3 4472 -- --
79.12 0.417 8.06 1.18 1.34 -- 0.209 -- -0.0366 16.9 -- -- -- --
79.23 0.417 8.06 1.18 1.34 -- -- -- -0.0355 16.9 -- -- -- --
166.25 0.601 8.06 1.25 -- -0.449 -- -- -0.151 -- 31.2 2653 -- --
115.48 0.5 8.09 -- 1.32 -0.134 -- -- -0.192 17 31.69 4447 -- --
174.32 0.617 8.04 1.13 -- -- -- -- -0.0701 -- -- -- -- --
116.13 0.504 8.09 -- 1.32 -- -- -- -0.167 17 -- -- -- --
201.42 0.663 8.06 -- -- 0.933 -- -- -0.161 -- 30.63 2640 -- --
208.23 0.674 8.07 -- -- -- -- -- -0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.22 atmosphere 1000.0 270 > th dose independent rect. 20 15
2 65.20 temperature 10.0 30 > th dose dependent rect. 2 6
4 65.26 temperature 10.0 90 > th dose dependent rect. 14 18
6 65.34 temperature 10.0 10 > th dose dependent rect. 15 17
10 65.70 wind 5.0 90 < th dose independent rect. 2 6
12 65.76 precipitation 0.1 90 < th dose independent rect. 2 6
13 65.76 precipitation 0.1 90 < th dose dependent rect. 2 6
18 65.87 temperature 15.0 270 > th dose independent rect. 11 9
25 65.94 wind 9.0 1440 < th dose independent rect. 3 6
26 65.94 temperature 10.0 1440 > th dose independent rect. 3 6
29 65.94 humidity 50.0 1440 > th dose independent rect. 3 6
31 65.94 atmosphere 995.0 1440 > th dose independent rect. 3 6
32 65.94 temperature 10.0 1440 > th dose independent rect. 9 18
37 65.98 atmosphere 1010.0 90 < th dose independent rect. 2 6
38 66.01 radiation 40.0 90 < th dose independent rect. 13 19
42 66.03 temperature 10.0 90 > th dose independent rect. 2 6
44 66.03 temperature 30.0 90 < th dose independent rect. 2 6
45 66.03 humidity 50.0 90 > th dose independent rect. 2 6
47 66.03 atmosphere 995.0 90 > th dose independent rect. 2 6
49 66.03 temperature 10.0 90 > th dose independent rect. 8 18
50 66.03 atmosphere 995.0 90 > th dose independent rect. 8 18
51 66.04 wind 9.0 90 < th dose independent rect. 8 18
65 66.11 wind 9.0 90 < th dose dependent rect. 2 6
67 66.13 radiation 40.0 90 < th dose independent rect. 2 6
68 66.15 temperature 15.0 90 > th dose independent rect. 14 18
69 66.16 precipitation 0.1 30 < th dose independent rect. 8 18
70 66.16 precipitation 0.1 30 < th dose dependent rect. 8 18
73 66.19 atmosphere 1010.0 90 < th dose independent rect. 13 19
94 66.39 atmosphere 1015.0 270 < th dose independent rect. 11 9
95 66.39 temperature 10.0 270 > th dose independent rect. 20 15
97 66.39 temperature 10.0 90 > th dose dependent rect. 8 5
107 66.40 humidity 50.0 270 > th dose independent rect. 20 15
119 66.42 precipitation 0.1 270 < th dose independent rect. 11 9
121 66.42 precipitation 0.1 270 < th dose dependent rect. 11 9
126 66.49 wind 9.0 270 < th dose independent rect. 20 15
147 66.63 temperature 10.0 270 > th dose dependent rect. 8 2
155 66.77 wind 1.0 270 > th dose independent rect. 11 9
166 66.79 precipitation 0.1 270 < th dose independent rect. 20 15
168 66.79 precipitation 0.1 270 < th dose dependent rect. 20 15
171 66.83 atmosphere 995.0 90 > th dose dependent rect. 8 18
174 66.86 radiation 1.0 90 > th dose independent rect. 8 6
177 66.89 humidity 50.0 30 > th dose independent rect. 8 18
178 66.90 wind 1.0 90 > th dose independent rect. 8 6
181 66.91 precipitation 0.1 90 < th dose independent rect. 8 6
182 66.91 wind 9.0 270 < th dose dependent rect. 8 3
183 66.91 precipitation 0.1 90 < th dose dependent rect. 8 6
184 66.91 atmosphere 1015.0 90 < th dose dependent rect. 13 19
189 66.93 atmosphere 995.0 90 > th dose independent rect. 8 7
193 66.93 atmosphere 1015.0 30 < th dose dependent rect. 15 17
196 66.95 temperature 10.0 90 > th dose independent rect. 8 6
198 66.95 atmosphere 1015.0 90 < th dose independent rect. 8 6
216 67.01 temperature 10.0 1440 > th dose independent rect. 9 7
220 67.01 temperature 10.0 1440 > th dose independent rect. 16 17
226 67.02 wind 9.0 270 < th dose independent rect. 11 9
227 67.03 precipitation 0.1 10 < th dose independent rect. 15 17
229 67.03 precipitation 0.1 10 < th dose dependent rect. 15 17
233 67.07 wind 9.0 90 < th dose independent rect. 8 6
235 67.08 precipitation 0.1 90 < th dose independent rect. 14 18
237 67.08 precipitation 0.1 90 < th dose dependent rect. 14 18
251 67.10 temperature 10.0 90 > th dose dependent rect. 17 15
268 67.21 temperature 15.0 270 > th dose independent rect. 11 21
270 67.22 wind 9.0 10 < th dose dependent rect. 2 7
280 67.23 humidity 50.0 270 > th dose independent rect. 11 9
281 67.23 wind 9.0 30 < th dose independent rect. 15 17
284 67.24 atmosphere 1015.0 10 < th dose dependent rect. 2 7
285 67.26 temperature 15.0 90 > th dose independent rect. 17 15
287 67.27 atmosphere 1000.0 270 > th dose independent rect. 19 7
315 67.37 wind 1.0 30 > th dose independent rect. 8 18
319 67.37 atmosphere 1015.0 270 < th dose dependent rect. 11 9
323 67.40 humidity 50.0 90 > th dose independent rect. 8 5
330 67.42 wind 9.0 90 < th dose dependent rect. 15 17
349 67.49 precipitation 0.1 270 < th dose independent rect. 10 22
351 67.49 precipitation 0.1 270 < th dose dependent rect. 10 22
357 67.51 wind 5.0 270 < th dose independent rect. 8 2
383 67.59 humidity 50.0 90 > th dose independent rect. 15 17
384 67.60 humidity 50.0 270 > th dose independent rect. 8 2
386 67.61 temperature 10.0 270 > th dose independent rect. 8 2
387 67.61 atmosphere 995.0 270 > th dose independent rect. 8 2
388 67.61 atmosphere 1015.0 270 < th dose independent rect. 8 2
398 67.63 wind 9.0 270 < th dose independent rect. 8 2
399 67.63 precipitation 0.1 270 < th dose independent rect. 8 2
400 67.63 precipitation 0.1 270 < th dose dependent rect. 8 2
430 67.69 atmosphere 995.0 270 > th dose independent rect. 11 9
449 67.74 atmosphere 1010.0 90 < th dose independent rect. 17 15
457 67.77 atmosphere 995.0 30 > th dose dependent rect. 2 6
471 67.81 atmosphere 995.0 90 > th dose independent rect. 8 9
476 67.83 temperature 30.0 270 < th dose independent rect. 20 15
505 67.87 humidity 50.0 90 > th dose independent rect. 17 15
509 67.88 atmosphere 995.0 90 > th dose independent rect. 15 17
514 67.89 radiation 40.0 270 < th dose dependent rect. 1 7
547 67.97 wind 9.0 90 < th dose independent rect. 8 9
560 68.00 atmosphere 1015.0 270 < th dose independent rect. 11 21
569 68.04 radiation 40.0 10 < th dose independent rect. 12 20
577 68.05 wind 9.0 90 < th dose dependent rect. 17 15
589 68.08 temperature 10.0 90 > th dose independent rect. 8 9
590 68.08 atmosphere 1015.0 90 < th dose independent rect. 8 9
605 68.10 precipitation 0.1 90 < th dose independent rect. 8 9
607 68.10 precipitation 0.1 90 < th dose dependent rect. 8 9
617 68.11 atmosphere 1000.0 10 > th dose independent rect. 23 14
629 68.13 wind 1.0 270 > th dose independent rect. 8 2
649 68.16 atmosphere 995.0 1440 > th dose independent rect. 9 5
660 68.17 precipitation 0.1 90 < th dose independent rect. 17 15
663 68.17 precipitation 0.1 90 < th dose dependent rect. 17 15
665 68.19 radiation 40.0 90 < th dose independent rect. 17 15
673 68.21 radiation 40.0 270 < th dose independent rect. 12 7
674 68.21 wind 9.0 90 < th dose independent rect. 17 15
692 68.24 radiation 40.0 90 < th dose dependent rect. 13 19
701 68.26 humidity 90.0 270 < th dose independent rect. 8 2
795 68.35 wind 9.0 270 < th dose independent rect. 11 21
802 68.37 wind 1.0 90 > th dose independent rect. 8 9
819 68.41 temperature 30.0 270 < th dose dependent rect. 19 7
836 68.46 atmosphere 1015.0 30 < th dose independent rect. 8 18
837 68.46 atmosphere 1015.0 270 < th dose dependent rect. 3 2
854 68.48 radiation 1.0 270 > th dose dependent rect. 8 2
884 68.51 atmosphere 995.0 90 > th dose independent rect. 17 15
921 68.56 radiation 1.0 270 > th dose independent rect. 8 3
954 68.58 wind 9.0 10 < th dose dependent rect. 15 17
986 68.62 temperature 10.0 270 > th dose independent rect. 6 7
987 68.62 atmosphere 995.0 270 > th dose independent rect. 6 7
988 68.62 atmosphere 1015.0 270 < th dose independent rect. 6 7