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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0191500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0413) R2 : 0.0102
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.189 (0.087) R2dN8 : 0.0131 R2N8 : 0.0102
σ : 0.779
deviance : 278.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.12 0.748 3.39 -0.339 0.399 0.581 -0.301 1.91 0.216 20.3 49.99 835 -- --
254.47 0.743 3.4 -0.412 0.405 0.992 -0.166 -- 0.23 20.2 50 864 -- --
253.34 0.741 3.38 -0.328 0.389 0.556 -- 1.84 0.219 20.4 49.92 847 -- --
254.54 0.743 3.4 -0.405 0.402 0.994 -- -- 0.234 20.5 50 865 -- --
262.11 0.754 3.37 -0.35 -- 0.695 -- 1.89 0.214 -- 49 823 -- --
264.48 0.762 3.42 -0.231 0.458 -- 0.247 -- 0.165 21.2 -- -- -- --
264.67 0.762 3.42 -0.239 0.46 -- -- -- 0.165 21 -- -- -- --
262.67 0.755 3.4 -0.433 -- 1.28 -- -- 0.185 -- 49 809 -- --
258.56 0.749 3.4 -- 0.413 0.843 -- -- 0.261 20.5 49.97 848 -- --
276.77 0.777 3.41 -0.239 -- -- -- -- 0.162 -- -- -- -- --
266.17 0.763 3.41 -- 0.46 -- -- -- 0.192 20.9 -- -- -- --
267.3 0.761 3.4 -- -- 1.14 -- -- 0.244 -- 48.98 808 -- --
278.27 0.779 3.4 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.39 humidity 80.0 30 < th dose independent rect. 23 4
3 242.41 humidity 80.0 90 < th dose dependent rect. 22 4
9 242.49 humidity 80.0 90 < th dose independent rect. 24 1
14 242.49 humidity 80.0 90 < th dose dependent rect. 24 1
15 242.49 humidity 80.0 10 < th dose dependent rect. 24 2
24 242.67 humidity 80.0 270 < th dose dependent rect. 22 1
28 243.65 humidity 80.0 270 < th dose independent rect. 22 1
66 248.85 wind 3.0 30 > th dose dependent rect. 10 1
68 248.98 wind 7.0 90 > th dose dependent rect. 7 3
75 249.19 wind 7.0 90 > th dose independent rect. 4 6
76 249.21 wind 7.0 90 > th dose independent rect. 8 1
78 249.28 wind 7.0 90 > th dose independent rect. 7 3
90 249.54 humidity 80.0 30 > th dose independent rect. 2 1
91 249.58 wind 1.0 30 < th dose independent rect. 2 1
95 249.71 humidity 80.0 30 > th dose dependent rect. 2 1
114 249.92 temperature 20.0 30 > th dose dependent rect. 2 1
126 250.10 atmosphere 1015.0 30 < th dose dependent rect. 2 1
128 250.12 temperature 20.0 30 > th dose independent rect. 2 1
155 250.38 wind 7.0 30 < th dose dependent rect. 2 1
159 250.40 wind 5.0 30 < th dose independent rect. 2 1
164 250.47 temperature 10.0 30 > th dose independent rect. 2 1
166 250.47 temperature 30.0 30 < th dose independent rect. 2 1
167 250.47 humidity 50.0 30 > th dose independent rect. 2 1
170 250.47 atmosphere 995.0 30 > th dose independent rect. 2 1
171 250.47 atmosphere 1010.0 30 < th dose independent rect. 2 1
173 250.47 radiation 1.0 30 < th dose independent rect. 2 1
178 250.47 precipitation 0.1 30 < th dose independent rect. 2 1
179 250.47 temperature 10.0 30 > th dose independent rect. 3 23
180 250.47 radiation 1.0 30 < th dose dependent rect. 2 1
185 250.47 precipitation 0.1 30 < th dose dependent rect. 2 1
208 250.79 atmosphere 995.0 30 > th dose dependent rect. 2 1
212 250.87 temperature 20.0 270 < th dose dependent rect. 22 1
220 251.08 humidity 90.0 90 > th dose independent rect. 8 1
222 251.08 wind 3.0 1440 < th dose dependent rect. 3 6
245 251.53 humidity 50.0 720 < th dose dependent rect. 12 2
252 251.60 temperature 30.0 30 < th dose dependent rect. 2 1
255 251.61 humidity 90.0 90 > th dose dependent rect. 8 2
266 251.75 humidity 50.0 720 > th dose independent rect. 12 7
267 251.80 humidity 50.0 720 < th dose independent rect. 12 1
294 251.93 wind 9.0 90 > th dose dependent rect. 20 14
299 251.96 wind 1.0 1440 < th dose independent rect. 6 4
316 252.11 wind 3.0 43200 < th dose independent rect. 12 1
325 252.17 wind 1.0 1440 > th dose independent rect. 6 4
338 252.29 wind 1.0 1440 < th dose dependent rect. 6 2
340 252.31 wind 3.0 720 < th dose independent rect. 3 2
341 252.32 wind 9.0 30 < th dose independent rect. 3 23
347 252.36 wind 3.0 43200 < th dose independent rect. 10 3
366 252.42 wind 1.0 1440 < th dose dependent rect. 6 4
377 252.58 wind 5.0 1440 < th dose independent rect. 21 2
382 252.61 wind 5.0 1440 > th dose dependent rect. 21 2
404 252.77 humidity 50.0 720 > th dose independent rect. 12 5
406 252.78 wind 1.0 30 > th dose independent rect. 2 1
408 252.81 wind 1.0 270 < th dose independent rect. 20 1
409 252.81 wind 5.0 1440 > th dose independent rect. 21 2
416 252.89 humidity 50.0 720 > th dose independent rect. 7 17
446 252.95 wind 5.0 1440 < th dose dependent rect. 3 2
455 253.06 atmosphere 1015.0 720 < th dose independent rect. 5 16
459 253.09 humidity 50.0 90 > th dose independent rect. 13 14
460 253.09 atmosphere 995.0 30 > th dose independent rect. 3 23
467 253.15 wind 5.0 270 > th dose independent rect. 21 2
471 253.19 temperature 25.0 90 < th dose independent rect. 20 9
488 253.31 temperature 20.0 270 < th dose dependent rect. 22 3
494 253.40 humidity 50.0 720 > th dose independent rect. 5 20
495 253.42 wind 1.0 270 < th dose independent rect. 17 5
496 253.42 temperature 25.0 270 < th dose dependent rect. 19 5
504 253.48 humidity 50.0 10 > th dose independent sin 13 NA
513 253.51 wind 1.0 1440 > th dose dependent rect. 3 4
522 253.56 wind 1.0 1440 > th dose dependent rect. 3 1
528 253.59 wind 5.0 1440 > th dose dependent rect. 18 11
535 253.63 wind 5.0 43200 < th dose dependent rect. 10 4
542 253.67 wind 1.0 1440 < th dose independent rect. 2 8
543 253.67 humidity 80.0 720 < th dose independent rect. 12 14
544 253.67 wind 1.0 14400 < th dose dependent rect. 12 2
547 253.69 wind 3.0 43200 > th dose independent rect. 12 1
551 253.69 wind 1.0 720 > th dose dependent rect. 3 6
557 253.72 wind 5.0 43200 < th dose dependent rect. 12 1
584 253.78 humidity 90.0 43200 < th dose independent rect. 3 5
592 253.81 wind 1.0 1440 > th dose independent rect. 2 8
597 253.82 wind 3.0 43200 > th dose independent rect. 10 4
599 253.82 humidity 50.0 720 > th dose independent rect. 21 22
600 253.82 wind 1.0 270 < th dose dependent rect. 19 3
602 253.82 wind 1.0 270 < th dose dependent rect. 16 6
622 253.89 wind 5.0 4320 > th dose independent rect. 20 9
624 253.89 humidity 50.0 720 < th dose independent rect. 17 21
658 253.99 humidity 80.0 720 > th dose independent rect. 19 7
669 254.01 wind 5.0 4320 < th dose independent rect. 21 8
690 254.06 humidity 90.0 43200 < th dose independent rect. 2 7
694 254.07 humidity 50.0 1440 > th dose independent rect. 16 1
707 254.10 temperature 20.0 270 < th dose dependent rect. 7 18
709 254.12 humidity 80.0 14400 > th dose independent rect. 3 5
722 254.17 radiation 40.0 90 > th dose independent rect. 13 1
758 254.31 wind 9.0 4320 < th dose independent rect. 3 1
781 254.34 radiation 1.0 14400 < th dose dependent rect. 21 1
784 254.35 temperature 30.0 14400 > th dose dependent rect. 8 1
804 254.37 humidity 80.0 720 < th dose dependent rect. 18 13
832 254.45 humidity 50.0 720 > th dose independent rect. 22 17
833 254.45 humidity 50.0 720 > th dose independent rect. 21 20
837 254.46 radiation 30.0 90 > th dose dependent rect. 13 1
840 254.46 temperature 30.0 90 < th dose dependent rect. 21 8
841 254.46 wind 7.0 90 > th dose dependent rect. 24 10
848 254.48 temperature 30.0 14400 < th dose independent rect. 20 13
861 254.53 humidity 50.0 720 > th dose independent rect. 9 8
863 254.53 humidity 50.0 720 > th dose independent rect. 24 15
864 254.53 wind 1.0 90 < th dose dependent rect. 4 1
882 254.56 humidity 50.0 720 > th dose independent rect. 5 16
907 254.60 radiation 30.0 30 > th dose dependent rect. 13 3
933 254.63 humidity 80.0 720 < th dose independent sin 15 NA
941 254.64 temperature 30.0 14400 < th dose independent rect. 23 10
946 254.65 wind 1.0 720 > th dose independent rect. 7 17
947 254.65 wind 9.0 14400 > th dose dependent rect. 12 1
955 254.66 temperature 30.0 14400 < th dose independent rect. 4 5
957 254.66 humidity 90.0 4320 > th dose dependent rect. 4 1
958 254.66 wind 1.0 14400 < th dose dependent rect. 9 8
964 254.67 temperature 25.0 10 < th dose dependent rect. 19 7
970 254.69 precipitation 0.1 30 < th dose independent rect. 3 23
972 254.69 precipitation 0.1 30 < th dose dependent rect. 3 23
993 254.73 wind 1.0 14400 < th dose dependent rect. 9 6
994 254.73 wind 1.0 14400 < th dose dependent rect. 11 6