Os08g0191200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoribosylglycinamide synthetase domain containing protein.
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Os08g0191200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphoribosylglycinamide synthetase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.25 | 0.564 | 9.18 | -1.19 | 2.65 | 1.78 | 1.38 | 3.12 | -0.59 | 19.4 | 11.32 | 141 | -- | -- |
| 158.79 | 0.587 | 9.16 | -1.23 | 2.56 | 1.49 | 1.1 | -- | -0.548 | 19.3 | 7.728 | 171 | -- | -- |
| 148.91 | 0.568 | 9.18 | -1.22 | 2.63 | 1.72 | -- | 2.83 | -0.584 | 19.3 | 12.52 | 150 | -- | -- |
| 159.57 | 0.588 | 9.18 | -1.22 | 2.59 | 1.6 | -- | -- | -0.599 | 19.6 | 4.611 | 189 | -- | -- |
| 277.42 | 0.776 | 9.16 | -1.35 | -- | 2.93 | -- | 0.744 | -0.828 | -- | -51.04 | 730 | -- | -- |
| 193.26 | 0.652 | 9.15 | -1.14 | 2.76 | -- | 1.39 | -- | -0.501 | 18.2 | -- | -- | -- | -- |
| 198.03 | 0.659 | 9.15 | -1.15 | 2.77 | -- | -- | -- | -0.497 | 18.3 | -- | -- | -- | -- |
| 278.16 | 0.777 | 9.16 | -1.38 | -- | 2.96 | -- | -- | -0.841 | -- | -44.14 | 732 | -- | -- |
| 196.48 | 0.653 | 9.15 | -- | 2.62 | 1.57 | -- | -- | -0.453 | 19.5 | 4.675 | 171 | -- | -- |
| 594.82 | 1.14 | 9.1 | -1.23 | -- | -- | -- | -- | -0.557 | -- | -- | -- | -- | -- |
| 233.08 | 0.714 | 9.12 | -- | 2.78 | -- | -- | -- | -0.368 | 18.2 | -- | -- | -- | -- |
| 328.11 | 0.844 | 9.13 | -- | -- | 2.91 | -- | -- | -0.683 | -- | -30.74 | 728 | -- | -- |
| 634.59 | 1.18 | 9.07 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 9 | 138.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 19 | 139.85 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 17 |
| 20 | 139.88 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 16 |
| 34 | 141.43 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 45 | 142.00 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 19 |
| 67 | 143.01 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 86 | 143.32 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 21 |
| 98 | 143.35 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 115 | 143.64 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 118 | 143.80 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 126 | 144.01 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 9 |
| 129 | 144.08 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 150 | 144.34 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 164 | 144.88 | radiation | 30 | 90 | < th | dose independent | rect. | 17 | 18 |
| 224 | 146.22 | radiation | 40 | 270 | < th | dose independent | rect. | 12 | 23 |
| 246 | 146.43 | radiation | 1 | 90 | > th | dose dependent | sin | 21 | NA |
| 264 | 146.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 285 | 147.18 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 7 |
| 351 | 148.07 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 352 | 148.07 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 367 | 148.12 | radiation | 30 | 270 | < th | dose independent | rect. | 13 | 21 |
| 387 | 148.31 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 10 |
| 421 | 148.60 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 18 |
| 598 | 149.99 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 17 |
| 601 | 150.01 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 6 |
| 612 | 150.10 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 780 | 150.65 | radiation | 40 | 90 | < th | dose dependent | sin | 21 | NA |
| 802 | 150.71 | radiation | 30 | 90 | < th | dose independent | rect. | 17 | 16 |
| 811 | 150.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 815 | 150.80 | radiation | 40 | 270 | < th | dose independent | sin | 7 | NA |
| 833 | 150.98 | radiation | 40 | 270 | > th | dose independent | sin | 7 | NA |