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Os08g0191100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14 (0.019) R2 : 0.853
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.51 (0.0742) R2dC : 1.79 R2C : 0.342
β3 : -1.89 (0.0769) R2dE : 0.483 R2E : -0.944
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.282 (0.0397) R2dN8 : 0.021 R2N8 : 0.00829
σ : 0.354
deviance : 57.81
__
_____
C
peak time of C : 20.8
E
wheather : radiation
threshold : 10
memory length : 272
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.47 0.35 14 -0.0151 3.52 -1.91 -1.07 1.5 0.278 20.8 10.01 273 12 --
57.53 0.353 14 0.0562 3.51 -1.89 0.269 -- 0.278 20.8 10 275 11.9 --
56.61 0.35 13.9 0.0518 3.54 -1.94 -- 0.688 0.277 20.8 10.08 284 12.1 --
57.71 0.354 14 0.0603 3.51 -1.89 -- -- 0.285 20.8 10 275 11.9 --
163.71 0.596 14 0.0332 -- -3.27 -- -1.14 0.192 -- 0.4485 1048 12.7 --
88.39 0.441 13.9 0.124 2.36 -- -0.0485 -- 0.365 19.3 -- -- -- --
88.4 0.44 13.9 0.125 2.36 -- -- -- 0.365 19.3 -- -- -- --
84.14 0.427 13.8 0.0557 -- -3.02 -- -- 0.266 -- 4.364 1007 8.16 --
57.81 0.354 14 -- 3.51 -1.89 -- -- 0.282 20.8 10 272 11.9 --
384.23 0.916 13.8 0.0845 -- -- -- -- 0.325 -- -- -- -- --
88.81 0.441 13.9 -- 2.36 -- -- -- 0.351 19.3 -- -- -- --
80.43 0.418 13.9 -- -- -2.74 -- -- 0.249 -- 37.88 1020 7.65 --
384.41 0.915 13.8 -- -- -- -- -- 0.316 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.16 humidity 90.0 270 < th dose independent rect. 11 7
2 54.16 temperature 10.0 270 > th dose dependent rect. 11 7
3 54.62 radiation 20.0 270 < th dose dependent rect. 15 9
4 54.81 radiation 10.0 270 < th dose independent rect. 15 9
7 54.95 radiation 10.0 270 < th dose dependent rect. 8 15
12 55.49 radiation 10.0 270 < th dose dependent sin 18 NA
16 55.63 radiation 40.0 270 < th dose dependent sin 16 NA
26 55.85 radiation 1.0 270 > th dose independent rect. 11 8
46 55.99 precipitation 0.1 270 < th dose independent rect. 11 7
47 55.99 precipitation 0.1 270 < th dose dependent rect. 11 7
49 56.07 wind 9.0 270 < th dose independent rect. 11 7
50 56.10 temperature 15.0 270 > th dose independent rect. 11 7
65 56.37 wind 9.0 270 < th dose independent rect. 18 17
67 56.38 wind 3.0 270 > th dose independent rect. 12 5
69 56.39 atmosphere 1015.0 270 < th dose independent rect. 11 7
70 56.39 temperature 10.0 270 > th dose independent rect. 18 17
73 56.43 atmosphere 995.0 270 > th dose independent rect. 18 17
75 56.47 humidity 50.0 270 > th dose independent rect. 18 17
76 56.49 wind 1.0 270 > th dose independent rect. 11 7
85 56.76 humidity 50.0 270 > th dose dependent rect. 22 9
86 56.77 precipitation 0.1 270 < th dose independent rect. 18 17
88 56.77 precipitation 0.1 270 < th dose dependent rect. 18 17
91 56.80 wind 9.0 270 < th dose independent rect. 24 17
94 56.85 radiation 1.0 270 > th dose dependent sin 16 NA
111 57.09 temperature 15.0 270 > th dose independent rect. 24 17
113 57.11 humidity 50.0 270 > th dose independent rect. 17 7
116 57.14 temperature 10.0 270 > th dose independent rect. 17 7
124 57.15 wind 9.0 270 < th dose independent rect. 17 7
125 57.16 atmosphere 1015.0 270 < th dose independent rect. 24 17
128 57.18 radiation 10.0 270 < th dose independent rect. 9 15
171 57.49 atmosphere 995.0 270 > th dose independent rect. 17 7
173 57.51 temperature 30.0 270 < th dose independent rect. 17 18
179 57.55 radiation 1.0 270 > th dose independent rect. 12 5
183 57.62 radiation 10.0 270 < th dose independent sin 17 NA
198 57.69 precipitation 0.1 270 < th dose independent rect. 4 8
200 57.69 precipitation 0.1 270 < th dose dependent rect. 4 8
218 57.78 precipitation 0.1 270 < th dose independent rect. 24 17
219 57.78 precipitation 0.1 270 < th dose dependent rect. 24 17
220 57.79 temperature 30.0 270 < th dose independent rect. 17 6
221 57.79 temperature 10.0 10 > th dose dependent rect. 14 6
234 57.96 wind 1.0 270 > th dose independent rect. 17 18
237 57.98 temperature 10.0 270 > th dose independent rect. 4 8
238 57.98 atmosphere 995.0 270 > th dose independent rect. 4 8
239 57.98 atmosphere 1015.0 270 < th dose independent rect. 4 8
241 57.98 temperature 10.0 270 > th dose independent rect. 12 16
248 58.05 precipitation 0.1 270 < th dose independent rect. 12 16
249 58.05 precipitation 0.1 270 < th dose dependent rect. 12 16
260 58.16 wind 1.0 270 > th dose independent rect. 17 7
262 58.17 wind 9.0 270 < th dose independent rect. 12 16
265 58.23 atmosphere 1015.0 270 < th dose independent rect. 17 7
274 58.32 precipitation 0.1 270 < th dose independent rect. 17 7
275 58.32 precipitation 0.1 270 < th dose dependent rect. 17 7
282 58.34 radiation 1.0 270 > th dose dependent rect. 12 7
302 58.40 wind 9.0 270 < th dose independent rect. 4 8
307 58.44 atmosphere 995.0 270 > th dose independent rect. 24 17
320 58.57 radiation 30.0 270 < th dose dependent rect. 22 9
322 58.58 radiation 40.0 270 < th dose independent rect. 18 17
326 58.62 atmosphere 995.0 270 > th dose independent rect. 12 5
351 58.76 atmosphere 995.0 270 > th dose independent rect. 11 7
361 58.80 atmosphere 1015.0 270 < th dose independent rect. 18 17
373 58.86 wind 1.0 270 > th dose dependent rect. 12 5
376 58.88 radiation 1.0 270 > th dose independent sin 19 NA
377 58.88 humidity 50.0 270 > th dose independent rect. 4 8
409 59.04 humidity 90.0 10 < th dose independent rect. 14 6
429 59.13 temperature 10.0 270 > th dose independent rect. 22 9
430 59.13 temperature 30.0 270 < th dose independent rect. 22 9
431 59.13 humidity 50.0 270 > th dose independent rect. 22 9
433 59.13 atmosphere 995.0 270 > th dose independent rect. 22 9
434 59.13 radiation 40.0 270 < th dose independent rect. 22 9
435 59.13 temperature 10.0 270 > th dose independent rect. 7 15
440 59.17 radiation 1.0 270 > th dose independent rect. 4 8
452 59.18 wind 9.0 270 < th dose independent rect. 22 9
493 59.42 radiation 10.0 270 > th dose independent sin 16 NA
520 59.61 atmosphere 1015.0 270 < th dose independent rect. 7 15
527 59.64 wind 1.0 270 > th dose independent rect. 4 8
558 59.79 precipitation 0.1 10 < th dose independent rect. 6 8
560 59.79 precipitation 0.1 10 < th dose dependent rect. 6 8
561 59.80 radiation 1.0 30 > th dose independent rect. 6 8
571 59.83 atmosphere 1015.0 270 < th dose independent rect. 17 19
576 59.86 temperature 10.0 10 > th dose independent rect. 6 8
578 59.86 atmosphere 995.0 10 > th dose independent rect. 6 8
579 59.86 atmosphere 1015.0 10 < th dose independent rect. 6 8
580 59.86 temperature 10.0 10 > th dose independent rect. 14 16
594 59.95 wind 1.0 10 > th dose independent rect. 6 8
604 60.00 radiation 40.0 10 < th dose independent rect. 14 16
618 60.06 radiation 40.0 270 < th dose independent rect. 17 19
621 60.07 wind 9.0 270 < th dose independent rect. 7 15
625 60.08 humidity 90.0 10 < th dose independent rect. 20 18
644 60.17 radiation 40.0 270 < th dose independent rect. 7 16
648 60.19 wind 9.0 10 < th dose independent rect. 14 16
700 60.33 precipitation 0.1 270 < th dose independent rect. 22 9
703 60.33 precipitation 0.1 270 < th dose dependent rect. 22 9
718 60.40 wind 9.0 90 < th dose independent rect. 19 6
723 60.41 radiation 1.0 270 < th dose independent rect. 22 10
726 60.42 temperature 10.0 90 > th dose independent rect. 19 6
727 60.42 temperature 30.0 90 < th dose independent rect. 19 6
728 60.42 humidity 50.0 90 > th dose independent rect. 19 6
730 60.42 atmosphere 995.0 90 > th dose independent rect. 19 6
731 60.42 radiation 1.0 90 < th dose independent rect. 19 6
738 60.42 radiation 1.0 90 < th dose dependent rect. 19 6
743 60.44 temperature 20.0 10 > th dose independent rect. 14 6
747 60.45 precipitation 0.1 30 < th dose independent rect. 14 16
748 60.45 precipitation 0.1 30 < th dose dependent rect. 14 16
762 60.50 atmosphere 995.0 270 > th dose dependent rect. 12 5
765 60.51 humidity 50.0 270 > th dose dependent rect. 17 6
770 60.53 wind 9.0 10 < th dose independent rect. 6 8
771 60.53 temperature 10.0 1440 > th dose independent rect. 7 8
775 60.53 temperature 10.0 1440 > th dose independent rect. 15 16
814 60.62 temperature 10.0 30 > th dose dependent rect. 14 16
859 60.75 temperature 10.0 270 > th dose dependent rect. 12 16
986 61.14 precipitation 0.1 10 < th dose independent rect. 14 6
987 61.14 precipitation 0.1 10 < th dose dependent rect. 14 6