Os08g0190300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0190300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.45 | 0.59 | 9.35 | -1.07 | 1.03 | 1.51 | 0.0435 | -2.92 | -0.187 | 6.39 | 17.2 | 5502 | -- | -- |
| 160.52 | 0.59 | 9.31 | -0.821 | 1.03 | 1.99 | 0.0666 | -- | -0.328 | 6.36 | 12.53 | 12712 | -- | -- |
| 157.41 | 0.584 | 9.35 | -1.06 | 1.04 | 1.48 | -- | -2.9 | -0.188 | 6.3 | 17.44 | 5644 | -- | -- |
| 160.45 | 0.59 | 9.31 | -0.817 | 1.04 | 1.96 | -- | -- | -0.323 | 6.32 | 11.88 | 12711 | -- | -- |
| 211.92 | 0.678 | 9.37 | -1.05 | -- | 1.57 | -- | -2.78 | -0.177 | -- | 16.75 | 5657 | -- | -- |
| 222.16 | 0.699 | 9.14 | 0.534 | 1.06 | -- | -0.0484 | -- | 0.409 | 6.1 | -- | -- | -- | -- |
| 222.17 | 0.698 | 9.14 | 0.533 | 1.06 | -- | -- | -- | 0.409 | 6.11 | -- | -- | -- | -- |
| 215.41 | 0.684 | 9.31 | -0.712 | -- | 2 | -- | -- | -0.234 | -- | 12.16 | 11431 | -- | -- |
| 168.69 | 0.605 | 9.24 | -- | 1.06 | 1.61 | -- | -- | -0.0401 | 6.32 | 11.74 | 9273 | -- | -- |
| 280.89 | 0.783 | 9.16 | 0.564 | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
| 229.67 | 0.709 | 9.16 | -- | 1.07 | -- | -- | -- | 0.349 | 6.08 | -- | -- | -- | -- |
| 219.89 | 0.691 | 9.23 | -- | -- | 1.69 | -- | -- | 0.115 | -- | 13.73 | 5632 | -- | -- |
| 289.27 | 0.794 | 9.18 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 2 | 154.82 | temperature | 20 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 3 | 154.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 5 | 154.87 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 7 | 154.90 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 9 | 154.91 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 69 | 155.12 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 74 | 155.13 | temperature | 15 | 14400 | > th | dose dependent | sin | 16 | NA |
| 105 | 155.18 | temperature | 30 | 14400 | < th | dose dependent | rect. | 12 | 18 |
| 108 | 155.19 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 139 | 155.24 | temperature | 15 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 171 | 155.28 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 200 | 155.30 | temperature | 15 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 291 | 155.39 | temperature | 30 | 14400 | < th | dose dependent | sin | 14 | NA |
| 310 | 155.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 323 | 155.41 | temperature | 15 | 14400 | > th | dose dependent | no | NA | NA |
| 361 | 155.43 | temperature | 15 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 393 | 155.45 | temperature | 15 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 575 | 155.56 | temperature | 30 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 596 | 155.58 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 685 | 155.63 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 697 | 155.63 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 839 | 155.72 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 854 | 155.73 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 864 | 155.74 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 1 |