FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0190100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0725) R2 : 0.374
β1 : -0.154 (0.263) R2dD : 0.000692 R2D : -0.00312
β2 : 1.64 (0.186) R2dC : 0.0921 R2C : 0.103
β3 : 3.4 (0.259) R2dE : 0.258 R2E : 0.238
β4 : -3.68 (0.847) R2dD*C : 0.0299 R2D*C : 0.0227
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.38 (0.163) R2dN8 : 0.0116 R2N8 : -0.0227
σ : 1.33
deviance : 819.94
__
_____
C
peak time of C : 5.23
E
wheather : radiation
threshold : 28.83
memory length : 1206
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.6
open length of G : 4.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
807.89 1.34 3.38 0.0672 1.62 3.21 -3.69 -2.71 0.434 5.1 25.44 1257 11.6 4.12
819.94 1.33 3.38 -0.154 1.64 3.4 -3.68 -- 0.38 5.23 28.83 1206 11.6 4.85
838.34 1.35 3.37 0.0843 1.6 3.15 -- -2.81 0.454 4.48 25.85 1255 11.5 4.18
856.62 1.36 3.39 -0.154 1.53 3.33 -- -- 0.405 4.83 28.49 1215 11.5 5.05
943.11 1.43 3.34 0.127 -- 3.67 -- -3.52 0.602 -- 29.95 1198 11.7 5.48
1087.75 1.55 3.59 -0.694 1.81 -- -3.34 -- -0.414 4.07 -- -- -- --
1116.49 1.56 3.59 -0.657 1.79 -- -- -- -0.395 3.58 -- -- -- --
948.93 1.43 3.43 -0.227 -- 3.91 -- -- 0.375 -- 30 1173 11.8 5.87
857.4 1.36 3.4 -- 1.5 3.32 -- -- 0.392 4.75 27.61 1215 11.6 5
1294.45 1.68 3.59 -0.582 -- -- -- -- -0.347 -- -- -- -- --
1127.86 1.57 3.57 -- 1.77 -- -- -- -0.322 3.58 -- -- -- --
940.78 1.43 3.43 -- -- 4.37 -- -- 0.369 -- 30 1169 11.6 7.28
1303.39 1.69 3.57 -- -- -- -- -- -0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 860.47 radiation 20 1440 < th dose dependent rect. 11 5
2 864.02 radiation 10 1440 < th dose dependent rect. 8 9
4 865.34 radiation 10 1440 < th dose dependent rect. 9 7
8 867.59 radiation 10 1440 < th dose dependent sin 21 NA
11 868.31 radiation 10 1440 < th dose dependent rect. 8 12
14 868.37 radiation 10 1440 < th dose dependent rect. 8 16
18 868.55 radiation 10 1440 < th dose dependent rect. 8 19
23 869.69 radiation 20 1440 < th dose dependent rect. 11 9
26 869.76 radiation 20 1440 < th dose dependent rect. 11 13
31 869.98 radiation 20 1440 < th dose dependent rect. 11 16
33 870.11 radiation 20 1440 < th dose dependent rect. 11 18
40 871.11 radiation 10 1440 < th dose dependent rect. 14 1
71 874.15 humidity 90 720 > th dose dependent rect. 20 1
127 877.23 humidity 70 720 > th dose dependent rect. 19 2
143 878.70 wind 1 270 < th dose independent rect. 3 1
152 879.14 humidity 90 720 > th dose dependent rect. 20 3
157 879.90 radiation 10 1440 < th dose independent rect. 13 4
190 881.40 radiation 20 1440 < th dose independent rect. 11 5
197 881.90 humidity 70 720 > th dose dependent rect. 18 4
204 882.77 humidity 70 1440 < th dose independent rect. 11 2
217 883.37 atmosphere 1005 720 > th dose independent rect. 19 6
222 883.61 radiation 10 1440 > th dose independent rect. 8 7
243 884.25 radiation 20 1440 < th dose dependent rect. 11 1
283 885.75 humidity 70 1440 < th dose independent rect. 11 21
298 886.31 radiation 1 1440 > th dose dependent rect. 12 4
312 886.59 humidity 60 1440 > th dose dependent rect. 12 5
320 886.76 atmosphere 1005 720 < th dose independent rect. 19 6
330 886.88 radiation 10 1440 > th dose independent rect. 8 22
353 887.12 humidity 70 1440 < th dose independent rect. 11 9
378 887.81 humidity 50 720 > th dose dependent sin 14 NA
380 887.91 humidity 90 1440 < th dose dependent rect. 12 5
422 889.32 radiation 20 1440 < th dose independent rect. 11 9
426 889.34 radiation 20 1440 < th dose independent rect. 11 13
436 889.52 radiation 20 1440 < th dose independent rect. 11 16
437 889.52 radiation 20 1440 < th dose independent rect. 11 18
438 889.53 humidity 70 1440 > th dose independent rect. 12 1
467 889.84 radiation 10 1440 < th dose independent rect. 13 7
473 889.91 radiation 10 1440 < th dose independent rect. 13 11
479 889.97 humidity 50 720 > th dose dependent rect. 16 14
483 890.09 humidity 70 1440 < th dose independent rect. 11 7
484 890.10 radiation 10 1440 < th dose independent rect. 13 14
492 890.35 radiation 10 1440 > th dose independent sin 23 NA
555 891.74 radiation 1 1440 > th dose dependent rect. 11 8
714 894.37 radiation 10 1440 > th dose independent rect. 17 22
746 894.94 humidity 60 720 > th dose dependent rect. 16 11
790 895.56 radiation 10 1440 > th dose independent rect. 5 11
819 895.75 atmosphere 1005 720 < th dose independent rect. 21 1
838 895.96 radiation 20 1440 < th dose dependent rect. 18 23
849 896.18 humidity 90 720 > th dose independent rect. 20 3
853 896.36 humidity 70 1440 > th dose independent rect. 11 21
856 896.47 radiation 20 1440 < th dose dependent rect. 2 15
862 896.56 humidity 90 720 > th dose independent rect. 20 1
870 896.71 radiation 20 1440 < th dose dependent rect. 22 19
891 896.99 radiation 10 1440 < th dose independent sin 18 NA
896 897.06 radiation 20 1440 < th dose dependent rect. 2 18
898 897.08 radiation 20 1440 < th dose dependent rect. 2 22
932 897.29 radiation 20 1440 < th dose dependent rect. 22 22
940 897.33 radiation 20 1440 < th dose dependent no NA NA
961 897.51 humidity 70 1440 < th dose independent sin 21 NA
967 897.59 radiation 20 1440 > th dose independent rect. 11 5