Os08g0189900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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Os08g0189900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 631.16 | 1.18 | 5.6 | -1.69 | 2.13 | 8.63 | 7.53 | 3.37 | -0.185 | 18.7 | -35.8 | 1075 | 10.9 | -- |
| 609.91 | 1.15 | 5.55 | -1.53 | 0.983 | 7.68 | 5.44 | -- | -0.134 | 19.9 | -127.4 | 1274 | 12.6 | -- |
| 693.43 | 1.23 | 5.51 | -1.56 | 1.3 | 5.69 | -- | -2.13 | -0.161 | 3.71 | -148 | 1330 | 13.6 | -- |
| 693.65 | 1.23 | 5.52 | -1.57 | 1.43 | 5.68 | -- | -- | -0.14 | 4.26 | -150.6 | 1334 | 14 | -- |
| 694.12 | 1.23 | 5.54 | -1.57 | -- | 6.95 | -- | -1.91 | -0.156 | -- | -154.1 | 1297 | 13.3 | -- |
| 933.07 | 1.43 | 5.52 | -1.86 | 4.54 | -- | -1.52 | -- | -0.212 | 3.63 | -- | -- | -- | -- |
| 939.54 | 1.44 | 5.52 | -1.84 | 4.52 | -- | -- | -- | -0.203 | 3.54 | -- | -- | -- | -- |
| 695.24 | 1.23 | 5.53 | -1.61 | -- | 7 | -- | -- | -0.137 | -- | -161.4 | 1301 | 13.4 | -- |
| 753.53 | 1.28 | 5.43 | -- | 2.17 | 6.93 | -- | -- | 0.00824 | 7.77 | -227.5 | 1345 | 15.6 | -- |
| 2082.12 | 2.13 | 5.52 | -1.65 | -- | -- | -- | -- | -0.083 | -- | -- | -- | -- | -- |
| 1028.32 | 1.5 | 5.47 | -- | 4.49 | -- | -- | -- | 0.00124 | 3.55 | -- | -- | -- | -- |
| 763.08 | 1.29 | 5.5 | -- | -- | 7.13 | -- | -- | 0.00387 | -- | -178.1 | 1317 | 13.5 | -- |
| 2153.51 | 2.17 | 5.48 | -- | -- | -- | -- | -- | 0.0995 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 658.13 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 3 | 661.37 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 14 |
| 4 | 661.64 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 6 | 661.92 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 6 |
| 23 | 672.91 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 46 | 679.06 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 50 | 679.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 53 | 679.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 54 | 679.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 58 | 679.56 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 77 | 681.43 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 80 | 682.23 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 109 | 683.20 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 111 | 683.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 129 | 683.95 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 146 | 684.68 | humidity | 70 | 1440 | < th | dose independent | sin | 18 | NA |
| 184 | 686.19 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 186 | 686.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 189 | 686.45 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 193 | 686.85 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 200 | 687.74 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 221 | 688.25 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 16 |
| 228 | 688.69 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 234 | 689.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 252 | 689.62 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 266 | 690.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 267 | 690.21 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 22 |
| 276 | 690.42 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 303 | 690.88 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 316 | 691.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 328 | 691.36 | humidity | 90 | 1440 | < th | dose dependent | sin | 22 | NA |
| 360 | 691.87 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 492 | 693.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 524 | 694.20 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 22 |
| 562 | 694.91 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 579 | 695.14 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 586 | 695.20 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 605 | 695.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 654 | 695.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 661 | 695.56 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 665 | 695.57 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 671 | 695.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 700 | 695.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 708 | 695.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 739 | 696.28 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 764 | 696.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 775 | 696.72 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 820 | 697.06 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 868 | 697.10 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 917 | 697.71 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 958 | 698.02 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |