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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0189600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Germin-like protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.58 (0.0549) R2 : 0.714
β1 : -3.42 (0.205) R2dD : 0.193 R2D : 0.231
β2 : 3.13 (0.142) R2dC : 0.296 R2C : 0.302
β3 : -4.11 (0.281) R2dE : 0.151 R2E : 0.242
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.336 (0.12) R2dN8 : 0.00898 R2N8 : 0.00289
σ : 1.02
deviance : 478.81
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_____
C
peak time of C : 5.23
E
wheather : radiation
threshold : 1.18
memory length : 1472
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.35
open length of G : 22.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
472.59 1.02 6.57 -3.82 3.22 -4.21 -0.945 -2.69 -0.397 5.09 1.17 1452 8.33 22.1
478.49 1.02 6.57 -3.5 3.19 -4.03 -0.99 -- -0.382 5.21 1.2 1461 8.32 22.1
472.07 1.01 6.58 -3.82 3.14 -4.33 -- -2.91 -0.348 5.2 1.171 1472 8.34 22.1
478.81 1.02 6.58 -3.42 3.13 -4.11 -- -- -0.336 5.23 1.18 1472 8.35 22.1
619.83 1.16 6.73 -4.16 -- -3.79 -- -1.51 -0.677 -- 3.885 530 7.71 22.3
696.26 1.24 6.64 -4.14 3.22 -- -1.27 -- -0.794 4.9 -- -- -- --
700.38 1.24 6.64 -4.14 3.21 -- -- -- -0.788 4.87 -- -- -- --
604.14 1.14 6.72 -4.08 -- -3.66 -- -- -0.685 -- 2.02 500 8.02 22.2
739.53 1.27 6.54 -- 3.18 -5.17 -- -- 0.0294 4.9 0.54 1454 8.42 22.3
1245.01 1.65 6.67 -4.02 -- -- -- -- -0.705 -- -- -- -- --
1152.14 1.59 6.54 -- 3.14 -- -- -- -0.327 4.92 -- -- -- --
994.42 1.47 6.36 -- -- -5.38 -- -- 0.738 -- 10 1963 8.28 22.8
1671.55 1.91 6.57 -- -- -- -- -- -0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 481.91 radiation 1 1440 > th dose independent rect. 8 22
7 484.73 radiation 1 1440 < th dose dependent rect. 8 22
16 487.11 radiation 1 1440 < th dose dependent rect. 12 18
25 489.06 radiation 1 1440 < th dose independent rect. 8 22
33 491.46 radiation 1 1440 < th dose independent rect. 12 18
46 494.75 radiation 1 1440 < th dose dependent rect. 5 20
54 495.51 radiation 1 1440 < th dose dependent rect. 5 14
56 496.11 radiation 1 1440 < th dose dependent rect. 17 23
65 496.60 radiation 1 1440 < th dose dependent rect. 20 23
67 496.68 radiation 1 1440 < th dose dependent no NA NA
69 496.71 radiation 1 1440 < th dose dependent rect. 24 23
72 496.77 radiation 1 1440 < th dose dependent rect. 22 23
75 496.82 radiation 1 1440 < th dose dependent rect. 12 23
119 498.46 radiation 1 1440 < th dose dependent rect. 15 23
138 500.30 radiation 1 1440 > th dose independent rect. 5 14
149 500.35 radiation 1 1440 > th dose independent no NA NA
197 500.74 radiation 1 1440 > th dose independent rect. 12 23
207 501.52 temperature 10 720 > th dose dependent rect. 4 15
209 501.83 radiation 1 1440 > th dose independent sin 14 NA
211 501.93 radiation 1 1440 < th dose dependent sin 13 NA
213 502.25 radiation 1 1440 > th dose independent rect. 17 23
230 502.84 temperature 20 1440 > th dose dependent rect. 13 4
237 503.13 radiation 1 1440 < th dose dependent sin 0 NA
263 504.54 radiation 1 1440 < th dose independent rect. 5 20
328 504.97 radiation 1 1440 < th dose independent rect. 20 23
332 505.02 radiation 1 1440 < th dose independent no NA NA
336 505.05 radiation 1 1440 < th dose independent rect. 24 23
338 505.08 radiation 1 1440 < th dose independent rect. 5 14
340 505.10 radiation 1 1440 < th dose independent rect. 22 23
345 505.15 radiation 1 1440 > th dose independent sin 23 NA
361 505.30 radiation 1 1440 < th dose independent rect. 12 23
417 507.04 radiation 1 1440 < th dose independent rect. 17 23
448 508.08 temperature 20 270 > th dose dependent rect. 6 21
453 508.20 temperature 30 90 < th dose dependent sin 20 NA
464 508.49 radiation 1 1440 < th dose independent sin 13 NA
562 511.11 radiation 1 1440 < th dose independent sin 0 NA
581 511.35 temperature 20 270 > th dose dependent rect. 20 23
585 511.48 radiation 1 1440 < th dose dependent rect. 8 17
589 511.58 temperature 10 720 > th dose dependent rect. 23 19
643 512.52 radiation 1 1440 > th dose independent rect. 8 11
657 512.67 radiation 1 1440 < th dose dependent rect. 8 11
664 512.83 temperature 25 1440 > th dose independent rect. 7 15
672 512.93 temperature 10 720 > th dose dependent rect. 22 21
714 513.47 radiation 1 1440 < th dose dependent rect. 13 12
742 513.94 temperature 20 270 > th dose dependent rect. 13 23
746 513.97 temperature 10 270 > th dose dependent rect. 20 23
771 514.27 temperature 25 1440 > th dose independent rect. 7 12
783 514.48 temperature 25 1440 < th dose independent rect. 7 15
803 514.68 radiation 1 1440 < th dose dependent rect. 13 6
837 515.11 radiation 1 1440 > th dose independent rect. 13 6
867 515.34 temperature 30 90 < th dose dependent rect. 5 23
901 515.66 temperature 20 270 > th dose dependent no NA NA
936 516.06 temperature 25 1440 > th dose independent sin 22 NA
945 516.19 temperature 10 720 > th dose dependent sin 0 NA
950 516.28 temperature 25 1440 < th dose independent rect. 7 12
953 516.35 wind 3 43200 > th dose dependent rect. 20 2
955 516.41 temperature 25 1440 > th dose independent rect. 7 8
961 516.45 wind 5 43200 < th dose independent rect. 20 1
965 516.49 wind 7 43200 > th dose independent rect. 17 1
986 516.74 temperature 25 270 > th dose independent sin 22 NA