Os08g0189500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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Os08g0189500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 392.47 | 0.931 | 4.36 | -2.1 | 0.82 | 2.38 | 1.7 | -7.5 | -0.551 | 2.62 | 20.51 | 263 | 23.2 | 8.25 |
| 460.85 | 1 | 4.35 | -0.75 | 0.565 | 2.4 | -4.03 | -- | -0.345 | 5.7 | 20.5 | 209 | 23 | 8.5 |
| 400.2 | 0.932 | 4.35 | -1.99 | 0.831 | 2.36 | -- | -6.51 | -0.525 | 3.04 | 20.51 | 261 | 23.2 | 8.25 |
| 479.84 | 1.02 | 4.28 | -1.08 | 0.686 | 2.25 | -- | -- | -0.287 | 4.16 | 20.3 | 214 | 22.9 | 8.58 |
| 417.51 | 0.952 | 4.35 | -1.88 | -- | 2.8 | -- | -5.64 | -0.542 | -- | 20.44 | 234 | 22.7 | 8.77 |
| 586.81 | 1.14 | 4.16 | -0.855 | 2.83 | -- | -2.64 | -- | 0.0171 | 4.92 | -- | -- | -- | -- |
| 603.82 | 1.15 | 4.16 | -0.85 | 2.81 | -- | -- | -- | 0.0295 | 4.75 | -- | -- | -- | -- |
| 487.38 | 1.03 | 4.28 | -1.14 | -- | 2.7 | -- | -- | -0.323 | -- | 20 | 214 | 22.6 | 8.87 |
| 508.97 | 1.05 | 4.27 | -- | 0.726 | 2.19 | -- | -- | -0.209 | 4.16 | 20.2 | 215 | 22.9 | 8.48 |
| 1020.88 | 1.49 | 4.18 | -0.744 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 622.85 | 1.17 | 4.14 | -- | 2.79 | -- | -- | -- | 0.124 | 4.76 | -- | -- | -- | -- |
| 518.94 | 1.06 | 4.25 | -- | -- | 2.64 | -- | -- | -0.186 | -- | 20.11 | 204 | 22.8 | 8.77 |
| 1035.48 | 1.5 | 4.17 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 402.06 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 14 | 439.46 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 20 | 445.95 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 3 |
| 28 | 448.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 29 | 448.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 32 | 449.98 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 6 |
| 35 | 450.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 38 | 451.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 42 | 452.63 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 51 | 454.88 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 10 |
| 73 | 457.84 | temperature | 20 | 90 | > th | dose independent | sin | 8 | NA |
| 75 | 458.09 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 4 |
| 81 | 459.42 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 98 | 461.01 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 107 | 461.62 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 2 |
| 130 | 462.83 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 20 | 4 |
| 137 | 463.26 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 145 | 463.74 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 11 |
| 174 | 465.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 190 | 466.63 | humidity | 70 | 270 | > th | dose dependent | sin | 10 | NA |
| 282 | 471.70 | wind | 1 | 270 | > th | dose independent | rect. | 5 | 23 |
| 301 | 472.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 310 | 473.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 316 | 473.14 | humidity | 70 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 348 | 474.51 | humidity | 80 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 358 | 474.68 | humidity | 90 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 395 | 475.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 417 | 476.32 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 443 | 477.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 472 | 478.25 | wind | 1 | 270 | > th | dose independent | sin | 11 | NA |
| 506 | 479.34 | wind | 3 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 508 | 479.43 | wind | 3 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 603 | 482.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 646 | 483.40 | wind | 3 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 714 | 484.76 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 722 | 484.90 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 759 | 485.87 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 764 | 486.04 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 784 | 486.47 | wind | 3 | 270 | < th | dose dependent | sin | 8 | NA |
| 790 | 486.58 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 792 | 486.60 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 799 | 486.69 | humidity | 90 | 270 | < th | dose independent | rect. | 19 | 14 |
| 829 | 487.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 901 | 487.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 919 | 488.05 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 942 | 488.45 | wind | 1 | 720 | > th | dose independent | rect. | 13 | 15 |
| 948 | 488.49 | wind | 3 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 973 | 488.83 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 2 |