Os08g0189400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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Os08g0189400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 499.66 | 1.05 | 4.48 | -0.694 | 2.8 | 2.9 | -1.46 | -2.43 | 0.446 | 3.96 | 6.375 | 1485 | 15.7 | -- |
| 503.11 | 1.04 | 4.49 | -0.787 | 2.76 | 3.15 | -1.46 | -- | 0.416 | 4.01 | 5.016 | 1568 | 17.1 | -- |
| 502.22 | 1.04 | 4.48 | -0.614 | 2.8 | 3.03 | -- | -2.18 | 0.463 | 3.9 | 5.696 | 1551 | 16.9 | -- |
| 509.37 | 1.05 | 4.48 | -0.776 | 2.74 | 3.12 | -- | -- | 0.427 | 3.9 | 5.094 | 1570 | 17.2 | -- |
| 589.13 | 1.13 | 4.61 | -1.08 | -- | 4.83 | -- | -2.22 | -0.0416 | -- | 9.241 | 860 | 13.2 | -- |
| 677.1 | 1.22 | 4.62 | -1.26 | 2.71 | -- | -1.85 | -- | -0.152 | 3.69 | -- | -- | -- | -- |
| 687.02 | 1.23 | 4.62 | -1.23 | 2.69 | -- | -- | -- | -0.141 | 3.57 | -- | -- | -- | -- |
| 595.68 | 1.14 | 4.6 | -1.15 | -- | 4.59 | -- | -- | 0.0321 | -- | 9.592 | 863 | 13.1 | -- |
| 521.23 | 1.06 | 4.48 | -- | 2.64 | 3.58 | -- | -- | 0.535 | 3.83 | 4.117 | 1574 | 17.8 | -- |
| 1091.16 | 1.54 | 4.62 | -1.12 | -- | -- | -- | -- | -0.0698 | -- | -- | -- | -- | -- |
| 727 | 1.26 | 4.59 | -- | 2.67 | -- | -- | -- | -0.00423 | 3.57 | -- | -- | -- | -- |
| 627.84 | 1.17 | 4.57 | -- | -- | 4.58 | -- | -- | 0.161 | -- | 6.634 | 855 | 13.7 | -- |
| 1124.17 | 1.56 | 4.6 | -- | -- | -- | -- | -- | 0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 511.22 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 2 | 511.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 3 | 512.98 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 7 | 515.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 8 | 515.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 14 | 515.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 34 | 516.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 39 | 517.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 42 | 517.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 45 | 517.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 60 | 517.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 72 | 517.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 81 | 518.57 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 98 | 519.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 126 | 520.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 156 | 522.08 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 157 | 522.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 312 | 525.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 357 | 527.03 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 359 | 527.18 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 386 | 527.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 396 | 528.12 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 409 | 528.84 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 447 | 529.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 453 | 530.20 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 461 | 530.59 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 509 | 531.33 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 536 | 531.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 570 | 532.71 | humidity | 70 | 1440 | < th | dose independent | sin | 18 | NA |
| 604 | 534.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 621 | 534.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 622 | 534.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 662 | 535.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 666 | 535.25 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 775 | 537.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 782 | 537.36 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 783 | 537.36 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 785 | 537.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 816 | 537.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 817 | 537.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 818 | 537.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 823 | 537.49 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 831 | 537.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 832 | 537.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 834 | 537.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 867 | 537.87 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 894 | 538.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 927 | 538.51 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 965 | 538.85 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 995 | 539.08 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |