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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0189100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Germin-like protein precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0205) R2 : 0.0357
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.178 (0.0432) R2dN8 : 0.0461 R2N8 : 0.0357
σ : 0.387
deviance : 68.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.87 0.381 2.85 -0.0495 0.0838 -0.321 0.0654 1.31 0.169 17.7 1 15 -- --
67.32 0.382 2.84 0.00259 0.069 -0.231 0.19 -- 0.18 17.4 1.1 14 -- --
65.82 0.378 2.85 -0.0534 0.0838 -0.328 -- 1.37 0.169 17.7 1 16 -- --
67.41 0.382 2.84 0.00533 0.0692 -0.225 -- -- 0.184 17.7 1.1 14 -- --
66.14 0.379 2.85 -0.0483 -- -0.281 -- 1.32 0.167 -- 1.049 16 -- --
68.47 0.388 2.84 0.027 0.0051 -- -0.164 -- 0.18 3.82 -- -- -- --
68.51 0.388 2.84 0.0291 0.0254 -- -- -- 0.181 22.1 -- -- -- --
67.62 0.383 2.84 0.00647 -- -0.188 -- -- 0.181 -- 1.094 14 -- --
67.41 0.382 2.84 -- 0.0688 -0.224 -- -- 0.183 17.8 1.094 14 -- --
68.55 0.387 2.84 0.0295 -- -- -- -- 0.181 -- -- -- -- --
68.54 0.387 2.84 -- 0.0255 -- -- -- 0.178 22.2 -- -- -- --
67.62 0.383 2.84 -- -- -0.189 -- -- 0.181 -- 1.066 14 -- --
68.58 0.387 2.84 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.57 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 58.57 atmosphere 1000.0 30 > th dose dependent rect. 2 1
5 58.59 wind 3.0 30 < th dose independent rect. 2 1
8 58.61 wind 7.0 30 < th dose dependent rect. 2 1
10 58.61 temperature 10.0 30 > th dose dependent rect. 2 1
15 58.63 temperature 10.0 30 > th dose independent rect. 2 1
17 58.63 temperature 30.0 30 < th dose independent rect. 2 1
18 58.63 humidity 50.0 30 > th dose independent rect. 2 1
22 58.63 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 58.63 radiation 1.0 30 < th dose independent rect. 2 1
29 58.63 precipitation 0.1 30 < th dose independent rect. 2 1
30 58.63 temperature 10.0 30 > th dose independent rect. 3 23
31 58.63 radiation 1.0 30 < th dose dependent rect. 2 1
36 58.63 precipitation 0.1 30 < th dose dependent rect. 2 1
39 58.66 humidity 50.0 30 > th dose dependent rect. 2 1
46 58.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
48 58.87 temperature 30.0 30 < th dose dependent rect. 2 1
54 59.07 wind 1.0 30 > th dose independent rect. 2 1
99 60.13 radiation 1.0 14400 < th dose dependent rect. 3 1
104 60.20 wind 9.0 1440 < th dose independent rect. 3 1
105 60.20 temperature 10.0 1440 > th dose independent rect. 3 1
108 60.20 temperature 30.0 1440 < th dose independent rect. 3 1
112 60.20 humidity 50.0 1440 > th dose independent rect. 3 1
121 60.20 atmosphere 995.0 1440 > th dose independent rect. 3 1
122 60.20 radiation 1.0 1440 < th dose independent rect. 3 1
142 60.20 temperature 10.0 1440 > th dose independent rect. 4 23
145 60.20 radiation 1.0 1440 < th dose dependent rect. 3 1
157 60.29 temperature 25.0 90 > th dose independent rect. 1 3
161 60.41 temperature 25.0 90 > th dose dependent rect. 1 3
162 60.45 wind 9.0 30 < th dose independent rect. 3 23
165 60.62 atmosphere 995.0 30 > th dose independent rect. 3 23
171 61.09 precipitation 0.1 30 < th dose independent rect. 3 23
172 61.09 precipitation 0.1 30 < th dose dependent rect. 3 23
196 62.48 temperature 30.0 30 < th dose independent rect. 3 23
202 62.73 humidity 50.0 30 > th dose independent rect. 3 23
212 63.14 atmosphere 1005.0 10 > th dose dependent rect. 2 3
303 64.37 wind 3.0 30 < th dose dependent rect. 2 3
327 64.71 atmosphere 1005.0 10 > th dose independent rect. 2 3
330 64.74 temperature 25.0 1440 < th dose independent rect. 1 1
331 64.75 temperature 25.0 1440 > th dose independent rect. 1 1
349 64.89 wind 1.0 10 < th dose independent rect. 9 18
358 64.97 temperature 20.0 10 > th dose independent rect. 2 3
367 65.04 humidity 90.0 90 < th dose independent rect. 2 1
379 65.12 wind 1.0 10 < th dose independent rect. 2 8
383 65.13 wind 1.0 10 > th dose independent rect. 19 23
384 65.13 atmosphere 1015.0 30 < th dose independent rect. 3 23
397 65.19 wind 1.0 10 > th dose independent rect. 5 23
464 65.50 wind 9.0 30 < th dose dependent rect. 3 23
465 65.51 humidity 80.0 720 > th dose independent rect. 3 4
466 65.51 wind 1.0 10 < th dose independent rect. 2 16
505 65.57 temperature 10.0 720 > th dose independent rect. 15 8
506 65.57 temperature 10.0 720 > th dose independent rect. 23 16
522 65.61 wind 1.0 720 > th dose independent rect. 15 8
526 65.62 atmosphere 995.0 720 > th dose independent rect. 23 16
530 65.65 atmosphere 995.0 720 > th dose independent rect. 15 8
544 65.69 wind 1.0 10 > th dose independent rect. 23 23
554 65.72 temperature 30.0 30 < th dose independent rect. 5 21
558 65.72 wind 3.0 30 < th dose dependent rect. 2 8
570 65.74 temperature 25.0 270 < th dose independent rect. 19 11
579 65.75 wind 9.0 720 < th dose independent rect. 3 8
580 65.75 wind 1.0 10 > th dose independent rect. 3 23
587 65.77 wind 9.0 10 < th dose independent rect. 5 21
591 65.78 humidity 50.0 30 > th dose independent rect. 5 21
593 65.79 precipitation 0.1 10 < th dose independent rect. 2 3
594 65.79 precipitation 0.1 10 < th dose dependent rect. 2 3
598 65.80 temperature 10.0 720 > th dose independent rect. 3 8
599 65.80 atmosphere 995.0 720 > th dose independent rect. 3 8
600 65.80 temperature 10.0 720 > th dose independent rect. 11 16
604 65.81 precipitation 0.1 10 < th dose independent rect. 5 21
608 65.81 precipitation 0.1 10 < th dose dependent rect. 5 21
617 65.83 temperature 10.0 10 > th dose independent rect. 2 3
619 65.83 temperature 30.0 10 < th dose independent rect. 2 3
620 65.83 humidity 50.0 10 > th dose independent rect. 2 3
623 65.83 atmosphere 995.0 10 > th dose independent rect. 2 3
625 65.83 atmosphere 1010.0 10 < th dose independent rect. 2 3
627 65.83 radiation 1.0 10 < th dose independent rect. 2 3
634 65.83 atmosphere 995.0 720 > th dose independent rect. 11 16
635 65.83 temperature 10.0 10 > th dose independent rect. 5 21
637 65.83 radiation 10.0 10 < th dose dependent rect. 2 3
645 65.84 atmosphere 995.0 10 > th dose independent rect. 5 21
652 65.86 wind 1.0 10 > th dose independent sin 4 NA
692 65.88 wind 1.0 10 > th dose independent rect. 20 15
709 65.92 humidity 80.0 720 > th dose independent rect. 5 2
721 65.95 wind 9.0 1440 < th dose independent rect. 3 3
722 65.95 temperature 10.0 1440 > th dose independent rect. 3 3
726 65.95 temperature 30.0 1440 < th dose independent rect. 3 3
730 65.95 humidity 50.0 1440 > th dose independent rect. 3 3
739 65.95 atmosphere 995.0 1440 > th dose independent rect. 3 3
740 65.95 radiation 20.0 1440 < th dose independent rect. 3 3
749 65.95 temperature 10.0 1440 > th dose independent rect. 6 21
754 65.96 humidity 50.0 720 > th dose independent rect. 3 8
759 65.97 precipitation 0.1 720 < th dose independent rect. 15 8
763 65.97 precipitation 0.1 720 < th dose dependent rect. 15 8
773 65.99 wind 1.0 10 > th dose independent rect. 5 21
784 66.01 humidity 70.0 720 > th dose independent rect. 23 8
793 66.02 humidity 50.0 10 > th dose dependent rect. 2 3
794 66.02 radiation 1.0 30 < th dose dependent rect. 2 17
799 66.03 temperature 25.0 720 > th dose independent rect. 17 10
813 66.05 humidity 50.0 720 > th dose dependent rect. 3 4
838 66.10 wind 1.0 10 > th dose independent no NA NA
841 66.10 temperature 30.0 720 < th dose independent rect. 3 8
851 66.11 wind 1.0 720 > th dose independent rect. 15 4
852 66.11 precipitation 0.1 720 < th dose independent rect. 3 8
855 66.11 precipitation 0.1 720 < th dose independent rect. 19 20
858 66.11 precipitation 0.1 720 < th dose dependent rect. 3 8
860 66.11 precipitation 0.1 720 < th dose dependent rect. 19 20
861 66.12 atmosphere 1015.0 720 < th dose independent rect. 3 4
870 66.13 wind 1.0 10 > th dose independent rect. 12 23
875 66.14 precipitation 0.1 720 < th dose independent rect. 23 16
878 66.14 precipitation 0.1 720 < th dose dependent rect. 23 16
879 66.15 wind 1.0 10 > th dose independent sin 17 NA
882 66.15 radiation 1.0 10 < th dose independent rect. 2 6
890 66.15 wind 1.0 10 > th dose independent rect. 23 12
921 66.16 wind 1.0 720 > th dose independent rect. 11 8
923 66.16 radiation 1.0 30 < th dose independent rect. 2 17
951 66.18 atmosphere 1015.0 720 < th dose independent rect. 3 12
957 66.19 temperature 25.0 270 < th dose independent sin 12 NA
964 66.20 temperature 25.0 720 < th dose independent rect. 19 6
968 66.20 wind 1.0 10 > th dose independent rect. 20 13
975 66.21 wind 3.0 720 > th dose independent rect. 17 2
980 66.21 precipitation 0.1 720 < th dose independent rect. 3 4
984 66.21 precipitation 0.1 720 < th dose dependent rect. 3 4
988 66.21 wind 9.0 30 < th dose dependent rect. 5 21
990 66.22 radiation 10.0 4320 > th dose independent rect. 7 3
999 66.22 precipitation 0.1 720 < th dose independent rect. 11 16