Os08g0188900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein precursor.
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Os08g0188900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Germin-like protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 504.2 | 1.05 | 3.68 | -1.61 | 2.32 | -2.18 | -4.42 | 3.91 | 0.229 | 3.92 | 69 | 1314 | -- | -- |
| 535.31 | 1.08 | 3.75 | -2.14 | 2.29 | -1.96 | -4.16 | -- | 0.0856 | 3.98 | 70 | 1326 | -- | -- |
| 557.4 | 1.1 | 3.68 | -1.6 | 2.32 | -2.19 | -- | 3.39 | 0.246 | 3.59 | 69 | 1318 | -- | -- |
| 579.11 | 1.12 | 3.75 | -2.08 | 2.31 | -2.04 | -- | -- | 0.106 | 3.54 | 70 | 1318 | -- | -- |
| 695.61 | 1.23 | 3.66 | -1.48 | -- | -3.13 | -- | 5.78 | 0.477 | -- | 71.88 | 1798 | -- | -- |
| 678.99 | 1.22 | 3.79 | -2.59 | 2.06 | -- | -4.61 | -- | -0.0884 | 4.16 | -- | -- | -- | -- |
| 736.45 | 1.27 | 3.79 | -2.55 | 2.02 | -- | -- | -- | -0.0629 | 3.78 | -- | -- | -- | -- |
| 754.22 | 1.28 | 3.71 | -2.05 | -- | -2.81 | -- | -- | 0.434 | -- | 71 | 1785 | -- | -- |
| 690.91 | 1.22 | 3.7 | -- | 2.34 | -2.3 | -- | -- | 0.332 | 3.41 | 70 | 1318 | -- | -- |
| 961.94 | 1.45 | 3.79 | -2.46 | -- | -- | -- | -- | -0.00899 | -- | -- | -- | -- | -- |
| 907.23 | 1.41 | 3.72 | -- | 1.97 | -- | -- | -- | 0.221 | 3.8 | -- | -- | -- | -- |
| 865.79 | 1.37 | 3.66 | -- | -- | -3.05 | -- | -- | 0.555 | -- | 70.01 | 1770 | -- | -- |
| 1121.78 | 1.56 | 3.73 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 511.88 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 2 | 512.55 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 3 | 512.63 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 16 | 512.83 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 18 | 512.85 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 19 | 512.86 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 21 | 512.89 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 26 | 513.05 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 31 | 513.54 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 33 | 513.76 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 45 | 514.12 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 77 | 515.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 80 | 515.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 81 | 515.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 82 | 515.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 83 | 515.51 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 92 | 515.91 | humidity | 70 | 1440 | < th | dose independent | sin | 19 | NA |
| 155 | 516.85 | radiation | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 230 | 518.73 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 235 | 518.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 281 | 519.47 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 338 | 519.59 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 347 | 519.92 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 392 | 520.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 412 | 521.21 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 414 | 521.21 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 415 | 521.22 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 418 | 521.26 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 429 | 521.49 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 436 | 521.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 438 | 521.60 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 442 | 521.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 448 | 521.71 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 454 | 521.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 523 | 522.50 | radiation | 1 | 1440 | > th | dose dependent | sin | 17 | NA |
| 559 | 522.74 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 560 | 522.74 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 659 | 523.11 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 662 | 523.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 689 | 523.57 | humidity | 70 | 1440 | > th | dose independent | sin | 19 | NA |
| 719 | 523.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 936 | 525.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 19 |
| 938 | 525.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 21 |
| 940 | 525.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 955 | 525.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 980 | 525.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 993 | 525.77 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |