Os08g0185300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0185300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.3 | 0.217 | 13.4 | -0.343 | 0.509 | 0.745 | 0.273 | -1.79 | -0.115 | 19.9 | 15.77 | 723 | -- | -- |
| 23.9 | 0.228 | 13.4 | -0.0401 | 0.624 | 0.63 | -0.077 | -- | -0.0349 | 20 | 13.44 | 2024 | -- | -- |
| 21.41 | 0.215 | 13.4 | -0.314 | 0.493 | 0.74 | -- | -1.63 | -0.107 | 20.1 | 16.3 | 658 | -- | -- |
| 23.79 | 0.227 | 13.4 | -0.0552 | 0.677 | 0.585 | -- | -- | -0.0281 | 19.7 | 12.51 | 2670 | -- | -- |
| 31.37 | 0.261 | 13.4 | -0.414 | -- | 1.12 | -- | -1.67 | -0.173 | -- | 16.98 | 603 | -- | -- |
| 30.65 | 0.26 | 13.3 | 0.177 | 0.68 | -- | -0.0366 | -- | 0.0914 | 20.1 | -- | -- | -- | -- |
| 30.66 | 0.259 | 13.3 | 0.178 | 0.68 | -- | -- | -- | 0.0914 | 20.1 | -- | -- | -- | -- |
| 33.59 | 0.27 | 13.3 | -0.111 | -- | 1.2 | -- | -- | -0.0951 | -- | 14.39 | 609 | -- | -- |
| 23.86 | 0.227 | 13.3 | -- | 0.672 | 0.563 | -- | -- | -0.0194 | 19.7 | 12.41 | 2602 | -- | -- |
| 56 | 0.35 | 13.3 | 0.172 | -- | -- | -- | -- | 0.083 | -- | -- | -- | -- | -- |
| 31.49 | 0.263 | 13.3 | -- | 0.679 | -- | -- | -- | 0.0715 | 20.1 | -- | -- | -- | -- |
| 33.89 | 0.271 | 13.3 | -- | -- | 1.16 | -- | -- | -0.0773 | -- | 13.94 | 604 | -- | -- |
| 56.78 | 0.352 | 13.3 | -- | -- | -- | -- | -- | 0.0639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 20.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 20.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 13 | 20.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 17 | 20.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 23 | 20.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 24 | 20.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 27 | 20.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 30 | 20.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 32 | 20.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 40 | 20.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 45 | 21.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 50 | 21.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 51 | 21.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 52 | 21.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 59 | 21.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 72 | 21.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 78 | 21.13 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 85 | 21.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 92 | 21.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 93 | 21.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 94 | 21.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 96 | 21.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 110 | 21.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 121 | 21.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 183 | 21.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 184 | 21.20 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 219 | 21.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 220 | 21.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 307 | 21.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 308 | 21.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 345 | 21.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 350 | 21.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 351 | 21.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 375 | 21.29 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 470 | 21.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 473 | 21.33 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 487 | 21.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 530 | 21.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 590 | 21.39 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 609 | 21.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 667 | 21.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 729 | 21.45 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 745 | 21.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 746 | 21.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 769 | 21.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 771 | 21.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 793 | 21.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 813 | 21.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 991 | 21.57 | humidity | 90 | 14400 | < th | dose independent | sin | 12 | NA |
| 997 | 21.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 999 | 21.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |