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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0183900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0219) R2 : 0.0038
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0607 (0.046) R2dN8 : 0.00491 R2N8 : 0.0038
σ : 0.412
deviance : 77.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.52 0.386 3.4 0.0821 0.305 0.165 -0.538 1.66 -0.0816 6.97 91.22 5903 -- --
71.23 0.393 3.4 -0.035 0.303 0.251 -0.606 -- -0.12 6.8 121.6 4300 -- --
68.14 0.384 3.4 0.062 0.312 0.156 -- 1.67 -0.0802 7.08 88.99 6335 -- --
72.03 0.395 3.39 -0.0296 0.309 0.276 -- -- -0.11 6.65 88 4304 -- --
73.12 0.398 3.41 0.0818 -- 0.155 -- 1.7 -0.0721 -- 91.17 5905 -- --
72.06 0.398 3.39 -0.0449 0.305 -- -0.564 -- -0.0733 6.86 -- -- -- --
72.87 0.4 3.38 -0.0544 0.303 -- -- -- -0.0717 6.97 -- -- -- --
76.76 0.408 3.4 -0.0449 -- 0.269 -- -- -0.107 -- 87 4270 -- --
72.04 0.395 3.39 -- 0.3 0.267 -- -- -0.11 6.99 88 4270 -- --
77.7 0.412 3.39 -0.0482 -- -- -- -- -0.0661 -- -- -- -- --
72.95 0.4 3.38 -- 0.303 -- -- -- -0.0656 6.98 -- -- -- --
76.81 0.408 3.4 -- -- 0.272 -- -- -0.107 -- 88 4270 -- --
77.76 0.412 3.39 -- -- -- -- -- -0.0607 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.74 humidity 80.0 10 < th dose independent rect. 6 2
3 61.84 radiation 10.0 30 > th dose independent rect. 7 1
4 61.89 humidity 80.0 10 < th dose independent rect. 4 4
6 61.91 humidity 80.0 10 < th dose independent rect. 23 9
26 63.51 radiation 10.0 10 > th dose independent rect. 16 16
27 63.57 temperature 25.0 30 > th dose independent rect. 7 1
53 64.62 atmosphere 1000.0 30 > th dose independent rect. 3 23
55 64.72 radiation 1.0 43200 < th dose dependent rect. 3 1
57 65.25 atmosphere 1005.0 90 > th dose dependent rect. 2 1
60 65.57 temperature 25.0 90 > th dose independent rect. 1 1
65 65.66 temperature 25.0 90 > th dose dependent rect. 1 2
69 65.75 atmosphere 1005.0 10 > th dose dependent rect. 2 2
81 65.82 wind 9.0 1440 < th dose independent rect. 3 1
83 65.82 temperature 10.0 1440 > th dose independent rect. 3 1
86 65.82 temperature 30.0 1440 < th dose independent rect. 3 1
90 65.82 humidity 50.0 1440 > th dose independent rect. 3 1
99 65.82 atmosphere 995.0 1440 > th dose independent rect. 3 1
100 65.82 radiation 1.0 1440 < th dose independent rect. 3 1
120 65.82 temperature 10.0 1440 > th dose independent rect. 4 23
132 65.95 wind 3.0 30 < th dose independent rect. 2 1
133 65.95 wind 3.0 30 < th dose dependent rect. 2 1
136 65.97 atmosphere 1005.0 30 > th dose independent rect. 2 1
145 66.01 humidity 90.0 30 > th dose independent rect. 2 1
147 66.02 temperature 10.0 30 > th dose independent rect. 2 1
149 66.02 temperature 30.0 30 < th dose independent rect. 2 1
150 66.02 humidity 50.0 30 > th dose independent rect. 2 1
153 66.02 atmosphere 995.0 30 > th dose independent rect. 2 1
154 66.02 atmosphere 1010.0 30 < th dose independent rect. 2 1
156 66.02 radiation 1.0 30 < th dose independent rect. 2 1
161 66.02 precipitation 0.1 30 < th dose independent rect. 2 1
162 66.02 temperature 10.0 30 > th dose independent rect. 3 23
163 66.02 humidity 50.0 30 > th dose dependent rect. 2 1
167 66.02 radiation 1.0 30 < th dose dependent rect. 2 1
172 66.02 precipitation 0.1 30 < th dose dependent rect. 2 1
179 66.08 atmosphere 1015.0 30 < th dose dependent rect. 2 1
182 66.17 temperature 30.0 30 < th dose dependent rect. 2 1
183 66.18 wind 1.0 30 > th dose independent rect. 2 1
192 66.29 precipitation 0.1 30 < th dose independent rect. 3 23
196 66.29 precipitation 0.1 30 < th dose dependent rect. 3 23
198 66.32 wind 9.0 30 < th dose independent rect. 3 23
236 66.51 radiation 10.0 30 < th dose independent rect. 3 23
237 66.52 radiation 10.0 30 < th dose dependent rect. 3 23
238 66.56 humidity 80.0 14400 < th dose dependent rect. 3 6
244 66.72 atmosphere 1000.0 30 > th dose independent rect. 8 23
247 66.76 humidity 80.0 14400 < th dose dependent rect. 7 2
253 66.81 atmosphere 1005.0 30 > th dose independent rect. 7 1
262 67.00 atmosphere 995.0 720 > th dose independent rect. 23 16
265 67.03 humidity 70.0 14400 > th dose independent rect. 8 1
268 67.08 humidity 90.0 90 < th dose dependent rect. 1 7
269 67.09 wind 5.0 10 < th dose dependent rect. 7 1
272 67.14 humidity 90.0 10 < th dose dependent rect. 7 1
273 67.16 humidity 50.0 14400 > th dose dependent rect. 8 1
276 67.20 humidity 70.0 14400 < th dose independent rect. 8 1
280 67.24 humidity 50.0 30 > th dose independent rect. 3 23
284 67.26 wind 3.0 30 < th dose independent rect. 7 1
295 67.32 precipitation 0.1 720 < th dose independent rect. 15 8
297 67.32 precipitation 0.1 720 < th dose dependent rect. 15 8
299 67.33 humidity 70.0 14400 > th dose independent rect. 4 5
300 67.33 humidity 70.0 14400 > th dose independent rect. 24 9
301 67.33 humidity 70.0 14400 > th dose independent rect. 22 11
302 67.34 humidity 70.0 14400 > th dose independent rect. 6 3
313 67.37 temperature 20.0 10 > th dose dependent rect. 7 1
325 67.45 humidity 80.0 14400 < th dose independent rect. 7 6
376 67.58 humidity 80.0 14400 > th dose independent rect. 7 6
388 67.60 wind 7.0 14400 < th dose independent rect. 9 1
393 67.61 wind 1.0 14400 < th dose dependent rect. 6 1
406 67.66 temperature 25.0 90 < th dose independent rect. 6 1
409 67.67 wind 1.0 30 > th dose independent rect. 7 1
417 67.69 humidity 60.0 14400 < th dose independent rect. 11 1
439 67.75 humidity 70.0 4320 > th dose independent rect. 10 1
440 67.75 temperature 10.0 720 > th dose independent rect. 15 8
444 67.75 temperature 10.0 720 > th dose independent rect. 23 16
445 67.75 wind 1.0 14400 < th dose dependent rect. 2 1
453 67.77 wind 1.0 14400 > th dose independent rect. 4 3
468 67.80 wind 1.0 14400 < th dose dependent rect. 4 3
475 67.81 humidity 50.0 4320 > th dose dependent rect. 23 14
478 67.82 humidity 50.0 4320 > th dose dependent rect. 11 2
480 67.82 humidity 50.0 4320 > th dose dependent rect. 2 11
483 67.83 humidity 90.0 4320 < th dose dependent rect. 12 1
486 67.83 humidity 90.0 4320 < th dose dependent rect. 23 16
496 67.85 wind 1.0 14400 < th dose independent rect. 4 3
550 67.89 humidity 90.0 4320 < th dose dependent rect. 3 12
557 67.90 precipitation 0.1 720 < th dose independent rect. 11 16
560 67.90 precipitation 0.1 720 < th dose dependent rect. 11 16
561 67.91 temperature 10.0 720 > th dose independent rect. 3 8
562 67.91 atmosphere 995.0 720 > th dose independent rect. 3 8
564 67.91 temperature 10.0 720 > th dose independent rect. 11 16
565 67.91 humidity 50.0 4320 > th dose dependent sin 5 NA
571 67.92 humidity 70.0 4320 > th dose independent sin 5 NA
573 67.92 humidity 80.0 14400 > th dose independent rect. 12 1
624 67.94 humidity 90.0 4320 < th dose dependent sin 5 NA
641 67.95 humidity 50.0 720 > th dose independent rect. 3 8
654 67.96 radiation 10.0 10 > th dose independent sin 11 NA
659 67.96 humidity 70.0 4320 < th dose independent rect. 20 19
672 67.97 wind 5.0 14400 < th dose independent rect. 9 8
698 67.98 wind 9.0 30 < th dose independent rect. 8 23
712 67.99 wind 5.0 14400 < th dose independent rect. 9 6
715 67.99 wind 9.0 720 < th dose independent rect. 3 8
776 68.02 humidity 70.0 4320 < th dose independent sin 5 NA
777 68.02 humidity 90.0 90 < th dose independent rect. 2 1
834 68.04 precipitation 0.1 10 < th dose independent rect. 7 1
844 68.04 precipitation 0.1 10 < th dose dependent rect. 7 1
845 68.04 wind 5.0 14400 < th dose dependent rect. 10 2
857 68.05 wind 5.0 14400 > th dose independent rect. 9 8
879 68.05 radiation 1.0 10 > th dose dependent rect. 7 1
895 68.06 wind 7.0 14400 > th dose independent rect. 9 1
898 68.06 temperature 10.0 10 > th dose independent rect. 7 1
900 68.06 temperature 30.0 10 < th dose independent rect. 7 1
901 68.06 humidity 50.0 10 > th dose independent rect. 7 1
903 68.06 atmosphere 995.0 10 > th dose independent rect. 7 1
904 68.06 atmosphere 1015.0 10 < th dose independent rect. 7 1
916 68.06 temperature 10.0 10 > th dose independent rect. 8 23
918 68.06 atmosphere 995.0 10 > th dose dependent rect. 7 1
997 68.09 wind 1.0 14400 < th dose independent rect. 6 1
998 68.09 wind 9.0 1440 < th dose independent rect. 8 1