Os08g0180500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0180500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.81 | 0.229 | 9.28 | 0.773 | 0.486 | -0.464 | -0.55 | -0.873 | 0.18 | 6.4 | 84 | 3967 | -- | -- |
| 24.72 | 0.232 | 9.28 | 0.798 | 0.463 | -0.506 | -0.535 | -- | 0.192 | 6.29 | 83.89 | 3900 | -- | -- |
| 24.46 | 0.23 | 9.28 | 0.78 | 0.499 | -0.437 | -- | -0.833 | 0.18 | 6.63 | 82.92 | 4156 | -- | -- |
| 25.31 | 0.234 | 9.27 | 0.812 | 0.478 | -0.536 | -- | -- | 0.191 | 6.46 | 83 | 3954 | -- | -- |
| 33.19 | 0.268 | 9.29 | 0.841 | -- | -0.666 | -- | 0.164 | 0.183 | -- | 102.2 | 2030 | -- | -- |
| 28.79 | 0.252 | 9.28 | 0.807 | 0.499 | -- | -0.479 | -- | 0.149 | 6.68 | -- | -- | -- | -- |
| 29.34 | 0.254 | 9.28 | 0.8 | 0.497 | -- | -- | -- | 0.151 | 6.83 | -- | -- | -- | -- |
| 31.02 | 0.259 | 9.29 | 0.828 | -- | -0.655 | -- | -- | 0.171 | -- | 154.2 | 573 | -- | -- |
| 32.72 | 0.266 | 9.31 | -- | 0.51 | -0.802 | -- | -- | 0.0351 | 6.88 | 67 | 30362 | -- | -- |
| 42.29 | 0.304 | 9.29 | 0.811 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 46.22 | 0.318 | 9.3 | -- | 0.507 | -- | -- | -- | 0.0621 | 6.74 | -- | -- | -- | -- |
| 45.36 | 0.314 | 9.31 | -- | -- | -0.791 | -- | -- | 0.061 | -- | 67 | 30801 | -- | -- |
| 59.64 | 0.36 | 9.31 | -- | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.30 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 13 | 22.44 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 27 | 22.54 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 66 | 22.80 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 71 | 22.82 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 111 | 22.97 | humidity | 80.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 115 | 22.98 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 125 | 22.99 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 127 | 23.00 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 138 | 23.04 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 171 | 23.09 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 234 | 23.21 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 428 | 23.43 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 449 | 23.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 474 | 23.47 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 484 | 23.48 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 535 | 23.51 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 579 | 23.54 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 671 | 23.58 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 694 | 23.60 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 720 | 23.61 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 833 | 23.69 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 913 | 23.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 920 | 23.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 986 | 23.77 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |