Os08g0179900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0179900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.07 | 0.221 | 14.1 | 0.591 | 0.733 | 0.693 | -0.044 | 0.219 | 0.0165 | 17.6 | 25.2 | 10 | -- | -- |
| 22.16 | 0.221 | 14.1 | 0.621 | 0.728 | 0.672 | -0.0846 | -- | 0.0222 | 17.6 | 25.2 | 10 | -- | -- |
| 22.08 | 0.219 | 14.1 | 0.59 | 0.733 | 0.694 | -- | 0.228 | 0.0165 | 17.6 | 25.2 | 10 | -- | -- |
| 22.17 | 0.219 | 14.1 | 0.623 | 0.73 | 0.677 | -- | -- | 0.0234 | 17.6 | 25.2 | 10 | -- | -- |
| 47.9 | 0.322 | 14.1 | 0.547 | -- | 0.563 | -- | 0.183 | -0.0433 | -- | 24.06 | 2 | -- | -- |
| 28.93 | 0.252 | 14.2 | 0.463 | 0.678 | -- | -0.15 | -- | -0.113 | 18.3 | -- | -- | -- | -- |
| 28.99 | 0.252 | 14.2 | 0.465 | 0.677 | -- | -- | -- | -0.113 | 18.3 | -- | -- | -- | -- |
| 47.96 | 0.324 | 14.1 | 0.568 | -- | 0.552 | -- | -- | -0.0407 | -- | 24 | 10 | -- | -- |
| 31.48 | 0.263 | 14.2 | -- | 0.699 | 0.441 | -- | -- | -0.0875 | 17.9 | 25.2 | 10 | -- | -- |
| 52.81 | 0.34 | 14.2 | 0.447 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 34.68 | 0.275 | 14.2 | -- | 0.671 | -- | -- | -- | -0.165 | 18.4 | -- | -- | -- | -- |
| 55.83 | 0.349 | 14.2 | -- | -- | 0.361 | -- | -- | -0.129 | -- | 24 | 10 | -- | -- |
| 58.07 | 0.356 | 14.2 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 3 | 21.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 4 | 21.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 30 | 21.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 31 | 21.60 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 57 | 21.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 120 | 21.95 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 12 |
| 127 | 21.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 142 | 22.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 154 | 22.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 169 | 22.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 178 | 22.10 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 184 | 22.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 187 | 22.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 189 | 22.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 190 | 22.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 191 | 22.12 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 193 | 22.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 207 | 22.14 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 218 | 22.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 223 | 22.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 226 | 22.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 228 | 22.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 234 | 22.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 316 | 22.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 317 | 22.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 321 | 22.29 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 362 | 22.34 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 419 | 22.39 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 429 | 22.40 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 469 | 22.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 492 | 22.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 546 | 22.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 552 | 22.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 557 | 22.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 608 | 22.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 668 | 22.61 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 726 | 22.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 740 | 22.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 764 | 22.67 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 892 | 22.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 907 | 22.75 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 5 |
| 949 | 22.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 23 |