Os08g0178900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os08g0178900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 368.3 | 0.902 | 3.14 | -0.0805 | 0.232 | -4.68 | -0.404 | -13.6 | -0.0304 | 8.38 | 8.685 | 103 | -- | -- |
| 383.44 | 0.919 | 3.09 | -0.219 | 0.235 | -0.317 | 0.0287 | -- | -0.0426 | 9.82 | 8.685 | 103 | -- | -- |
| 368.58 | 0.894 | 3.13 | -0.0992 | 0.228 | -4.62 | -- | -13.8 | -0.0247 | 9.07 | 8.713 | 100 | -- | -- |
| 380.11 | 0.908 | 3.09 | -0.123 | 0.198 | -0.889 | -- | -- | -0.00352 | 9.38 | 8.427 | 157 | -- | -- |
| 371.57 | 0.898 | 3.15 | -0.0811 | -- | -4.79 | -- | -14.5 | -0.0378 | -- | 8.7 | 100 | -- | -- |
| 383.79 | 0.918 | 3.09 | -0.241 | 0.234 | -- | 0.0377 | -- | -0.0497 | 9.98 | -- | -- | -- | -- |
| 383.8 | 0.917 | 3.09 | -0.24 | 0.234 | -- | -- | -- | -0.0497 | 9.91 | -- | -- | -- | -- |
| 382.1 | 0.91 | 3.09 | -0.0839 | -- | -1.04 | -- | -- | 0.0102 | -- | 7.9 | 126 | -- | -- |
| 379.8 | 0.908 | 3.08 | -- | 0.238 | -0.978 | -- | -- | 0.0158 | 9.33 | 8 | 152 | -- | -- |
| 387.08 | 0.919 | 3.1 | -0.242 | -- | -- | -- | -- | -0.0497 | -- | -- | -- | -- | -- |
| 385.31 | 0.918 | 3.09 | -- | 0.235 | -- | -- | -- | -0.0231 | 9.98 | -- | -- | -- | -- |
| 382.38 | 0.911 | 3.09 | -- | -- | -1.19 | -- | -- | 0.0113 | -- | 7.9 | 126 | -- | -- |
| 388.62 | 0.92 | 3.09 | -- | -- | -- | -- | -- | -0.0229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 358.27 | wind | 3.0 | 720 | > th | dose independent | rect. | 22 | 10 |
| 2 | 358.35 | wind | 3.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 5 | 358.62 | wind | 3.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 7 | 358.95 | wind | 3.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 24 | 360.18 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 25 | 360.25 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 31 | 360.77 | temperature | 20.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 34 | 360.77 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 36 | 360.77 | wind | 3.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 38 | 360.78 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 39 | 360.78 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 43 | 360.90 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 44 | 360.92 | wind | 3.0 | 720 | > th | dose independent | sin | 8 | NA |
| 48 | 361.05 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 53 | 361.23 | wind | 3.0 | 720 | < th | dose independent | rect. | 22 | 8 |
| 61 | 361.61 | wind | 3.0 | 720 | < th | dose independent | rect. | 21 | 14 |
| 76 | 362.08 | wind | 3.0 | 720 | < th | dose independent | sin | 8 | NA |
| 85 | 362.19 | wind | 3.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 95 | 362.47 | wind | 5.0 | 10 | > th | dose independent | rect. | 23 | 10 |
| 120 | 362.92 | wind | 9.0 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 127 | 363.05 | wind | 9.0 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 129 | 363.07 | wind | 5.0 | 30 | > th | dose independent | rect. | 24 | 6 |
| 158 | 363.46 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 173 | 363.56 | temperature | 20.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 181 | 363.65 | wind | 5.0 | 10 | > th | dose dependent | rect. | 22 | 11 |
| 187 | 363.68 | temperature | 20.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 202 | 363.71 | wind | 9.0 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 207 | 363.76 | temperature | 20.0 | 90 | < th | dose independent | rect. | 7 | 11 |
| 221 | 363.82 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 2 |
| 227 | 363.82 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 238 | 363.90 | wind | 5.0 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 250 | 363.95 | temperature | 20.0 | 10 | < th | dose independent | rect. | 7 | 12 |
| 268 | 364.00 | wind | 5.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 301 | 364.17 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 19 |
| 305 | 364.18 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 309 | 364.20 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 325 | 364.29 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 328 | 364.29 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 345 | 364.41 | wind | 3.0 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 354 | 364.46 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 364 | 364.50 | wind | 5.0 | 10 | > th | dose dependent | rect. | 22 | 3 |
| 377 | 364.57 | wind | 3.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 433 | 364.92 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 446 | 364.99 | wind | 5.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 466 | 365.09 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 467 | 365.11 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 3 |
| 468 | 365.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 3 |
| 487 | 365.26 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 488 | 365.27 | humidity | 80.0 | 720 | < th | dose independent | rect. | 1 | 7 |
| 507 | 365.37 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 518 | 365.44 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 549 | 365.58 | wind | 9.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 602 | 365.75 | wind | 5.0 | 10 | > th | dose independent | rect. | 22 | 3 |
| 625 | 365.82 | wind | 3.0 | 30 | > th | dose independent | rect. | 3 | 8 |
| 711 | 366.13 | wind | 5.0 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 737 | 366.22 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 777 | 366.40 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 795 | 366.45 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 811 | 366.51 | wind | 3.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 838 | 366.62 | wind | 3.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 888 | 366.80 | wind | 5.0 | 720 | > th | dose independent | rect. | 2 | 4 |
| 901 | 366.85 | wind | 7.0 | 10 | > th | dose dependent | rect. | 11 | 8 |
| 903 | 366.86 | wind | 5.0 | 10 | > th | dose independent | sin | 8 | NA |
| 907 | 366.88 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 921 | 366.92 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 955 | 367.03 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 979 | 367.10 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 5 |