Os08g0178800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0178800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	7.27	(0.0391)	R²	:	0.939
β₁	:	1.2	(0.144)	R²_dD	:	0.0101	R²_D	:	-0.0049
β₂	:	6.79	(0.108)	R²_dC	:	0.621	R²_C	:	0.815
β₃	:	-2.98	(0.108)	R²_dE	:	0.119	R²_E	:	0.3
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.414	(0.0834)	R²_dN8	:	0.00361	R²_N8	:	-0.00297
σ	:	0.73
deviance	:	245.54
__

_____

C
peak time of C	:	7.37
E
wheather	:	temperature
threshold	:	19.7
memory length	:	270
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	18.5
open length of G	:	6.03

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
244.96	0.735	7.27	1.23	6.98	-2.92	-0.338	0.878	0.376	7.37	19.6	256	18.9	6.02
245.17	0.729	7.28	1.23	6.89	-2.92	-0.688	--	0.373	7.36	19.6	250	18.7	6.13
243.96	0.727	7.26	1.26	6.94	-2.96	--	1.22	0.376	7.37	19.63	265	18.8	5.98
245.54	0.73	7.27	1.2	6.79	-2.98	--	--	0.414	7.37	19.7	270	18.5	6.03
1671.73	1.91	7.41	1.26	--	-5.02	--	-0.251	0.596	--	17.22	40	18.1	7.53
437.77	0.981	7.25	0.902	8.02	--	0.127	--	0.28	8.27	--	--	--	--
437.82	0.98	7.25	0.905	8.02	--	--	--	0.28	8.27	--	--	--	--
558.81	1.1	7.38	2.21	--	-5.77	--	--	0.591	--	17.97	239	12.9	11.7
282.99	0.783	7.31	--	6.89	-2.88	--	--	0.245	7.37	19.64	269	18.5	6.1
4001.95	2.96	7.46	0.96	--	--	--	--	0.369	--	--	--	--	--
459.42	1	7.28	--	8.03	--	--	--	0.179	8.27	--	--	--	--
495.02	1.04	7.42	--	--	-6.64	--	--	0.466	--	17.37	363	11.2	11.9
4026.26	2.96	7.49	--	--	--	--	--	0.262	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	251.67	temperature	20.0	270	> th	dose independent	rect.	19	6
4	255.49	temperature	15.0	270	> th	dose dependent	rect.	19	5
50	289.42	atmosphere	1015.0	270	< th	dose independent	rect.	5	20
54	291.22	temperature	15.0	10	> th	dose dependent	rect.	20	7
59	292.21	temperature	20.0	10	> th	dose independent	rect.	20	7
63	292.65	atmosphere	1015.0	270	< th	dose independent	rect.	6	18
68	295.16	temperature	20.0	10	> th	dose independent	rect.	22	5
75	297.30	atmosphere	1015.0	270	< th	dose independent	rect.	17	8
83	298.82	temperature	30.0	270	< th	dose dependent	rect.	23	6
90	300.69	temperature	15.0	270	> th	dose independent	rect.	5	20
91	301.33	temperature	10.0	270	> th	dose dependent	rect.	19	15
103	303.23	temperature	15.0	270	> th	dose independent	rect.	6	18
117	304.45	atmosphere	1015.0	270	< th	dose independent	rect.	19	15
130	305.90	wind	5.0	270	< th	dose independent	rect.	1	4
131	305.90	radiation	40.0	270	< th	dose dependent	rect.	15	10
168	310.01	precipitation	0.1	270	< th	dose independent	rect.	1	4
169	310.01	precipitation	0.1	270	< th	dose dependent	rect.	1	4
172	310.29	radiation	20.0	270	< th	dose independent	rect.	15	10
174	310.44	temperature	20.0	90	> th	dose independent	rect.	21	16
185	311.29	temperature	10.0	270	> th	dose independent	rect.	1	4
187	311.29	temperature	30.0	270	< th	dose independent	rect.	1	4
188	311.29	humidity	50.0	270	> th	dose independent	rect.	1	4
191	311.29	atmosphere	995.0	270	> th	dose independent	rect.	1	4
192	311.29	atmosphere	1010.0	270	< th	dose independent	rect.	1	4
194	311.29	radiation	20.0	270	< th	dose independent	rect.	1	4
198	311.31	radiation	40.0	270	< th	dose dependent	rect.	1	4
204	311.38	radiation	1.0	270	< th	dose independent	rect.	1	4
212	312.45	temperature	20.0	10	> th	dose independent	rect.	22	14
217	313.19	wind	9.0	270	< th	dose dependent	rect.	1	4
225	313.67	wind	5.0	270	< th	dose independent	rect.	24	6
228	313.79	wind	1.0	270	> th	dose independent	rect.	1	4
230	314.01	precipitation	0.1	270	< th	dose independent	rect.	1	16
231	314.01	precipitation	0.1	270	< th	dose dependent	rect.	1	16
245	314.88	wind	9.0	270	< th	dose independent	rect.	1	16
251	315.07	precipitation	0.1	270	< th	dose independent	rect.	5	20
252	315.07	precipitation	0.1	270	< th	dose dependent	rect.	5	20
254	315.14	wind	9.0	270	< th	dose independent	rect.	5	20
256	315.31	precipitation	0.1	270	< th	dose independent	rect.	24	6
257	315.31	precipitation	0.1	270	< th	dose dependent	rect.	24	6
267	315.69	temperature	10.0	270	> th	dose independent	rect.	1	16
268	315.69	atmosphere	1015.0	270	< th	dose independent	rect.	1	16
269	315.70	humidity	50.0	270	> th	dose independent	rect.	17	8
272	315.95	temperature	15.0	270	> th	dose independent	rect.	19	15
273	316.00	wind	9.0	270	< th	dose independent	rect.	17	8
282	316.37	radiation	20.0	270	< th	dose dependent	rect.	24	6
298	316.75	atmosphere	1010.0	270	< th	dose independent	rect.	24	6
299	316.77	temperature	10.0	270	> th	dose independent	rect.	24	6
300	316.77	temperature	30.0	270	< th	dose independent	rect.	24	6
301	316.77	humidity	50.0	270	> th	dose independent	rect.	24	6
304	316.77	atmosphere	995.0	270	> th	dose independent	rect.	24	6
305	316.77	radiation	20.0	270	< th	dose independent	rect.	24	6
378	318.20	atmosphere	995.0	270	> th	dose independent	rect.	5	20
381	318.34	temperature	15.0	270	> th	dose independent	rect.	5	8
383	318.38	precipitation	0.1	270	< th	dose independent	rect.	17	8
384	318.38	precipitation	0.1	270	< th	dose dependent	rect.	17	8
390	318.58	wind	9.0	270	< th	dose independent	rect.	13	16
392	318.69	radiation	1.0	270	< th	dose dependent	rect.	1	9
394	318.81	humidity	50.0	270	> th	dose dependent	rect.	1	4
398	319.02	atmosphere	995.0	270	> th	dose independent	rect.	17	8
405	319.18	temperature	30.0	270	< th	dose dependent	rect.	1	3
437	319.83	wind	1.0	270	> th	dose independent	rect.	17	8
438	319.87	precipitation	0.1	270	< th	dose independent	rect.	6	18
439	319.87	precipitation	0.1	270	< th	dose dependent	rect.	6	18
443	319.92	temperature	10.0	270	> th	dose dependent	rect.	10	9
446	320.06	wind	9.0	270	< th	dose independent	rect.	6	18
464	320.49	radiation	1.0	270	< th	dose independent	rect.	24	10
470	320.59	atmosphere	1015.0	10	< th	dose independent	rect.	6	21
480	320.87	wind	9.0	270	< th	dose dependent	rect.	24	6
482	320.92	wind	9.0	270	< th	dose independent	rect.	5	8
484	321.00	precipitation	0.1	270	< th	dose independent	rect.	5	8
485	321.00	precipitation	0.1	270	< th	dose dependent	rect.	5	8
497	321.23	atmosphere	995.0	270	> th	dose independent	rect.	5	8
498	321.23	atmosphere	1015.0	270	< th	dose independent	rect.	5	8
499	321.23	temperature	10.0	270	> th	dose independent	rect.	13	16
506	321.51	precipitation	0.1	270	< th	dose independent	rect.	13	16
507	321.51	precipitation	0.1	270	< th	dose dependent	rect.	13	16
508	321.52	precipitation	0.1	270	< th	dose independent	rect.	10	9
509	321.52	precipitation	0.1	270	< th	dose dependent	rect.	10	9
555	322.64	radiation	1.0	270	< th	dose independent	rect.	11	14
572	322.99	radiation	1.0	270	< th	dose independent	rect.	5	20
577	323.10	wind	9.0	270	< th	dose independent	rect.	10	9
610	323.85	temperature	10.0	270	> th	dose independent	rect.	10	9
611	323.85	atmosphere	1015.0	270	< th	dose independent	rect.	10	9
613	323.85	atmosphere	995.0	270	> th	dose independent	rect.	19	15
616	323.91	wind	9.0	270	< th	dose independent	rect.	19	15
627	324.06	radiation	1.0	270	< th	dose dependent	rect.	5	20
635	324.17	humidity	50.0	270	> th	dose independent	rect.	19	15
670	325.07	humidity	50.0	270	> th	dose independent	rect.	5	20
691	325.46	atmosphere	995.0	270	> th	dose independent	rect.	1	16
785	326.57	atmosphere	1015.0	10	< th	dose independent	rect.	7	18
809	326.91	precipitation	0.1	270	< th	dose independent	rect.	19	15
810	326.91	precipitation	0.1	270	< th	dose dependent	rect.	19	15
839	327.45	radiation	1.0	90	< th	dose dependent	rect.	9	18
878	328.10	humidity	50.0	270	> th	dose independent	rect.	5	8
885	328.27	precipitation	0.1	90	< th	dose independent	rect.	3	16
887	328.27	precipitation	0.1	90	< th	dose dependent	rect.	3	16
898	328.44	temperature	30.0	270	< th	dose independent	rect.	5	20
908	328.55	temperature	30.0	270	< th	dose independent	rect.	17	8
919	328.88	wind	1.0	270	> th	dose independent	rect.	5	19
963	329.54	wind	1.0	270	> th	dose independent	rect.	10	9