FiT-DB / Search/ Help/ Sample detail

Os08g0178700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calmodulin-binding diacylglycerol kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0177) R2 : 0.862
β1 : -1.26 (0.0646) R2dD : 0.12 R2D : 0.0977
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.45 (0.0493) R2dE : 0.772 R2E : 0.746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0841 (0.0379) R2dN8 : 0.00086 R2N8 : -0.0122
σ : 0.33
deviance : 50.14
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 4.257
memory length : 364
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.4
open length of G : 7.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.23 0.305 11.3 -1.36 0.712 1.97 0.98 -1.01 -0.0694 10.2 9.711 280 1.02 6.9
42.54 0.304 11.3 -1.28 0.67 2.19 0.75 -- -0.0727 10.9 7.658 317 0.733 6.72
44.84 0.312 11.3 -1.25 0.692 2.05 -- -0.334 -0.0671 10.3 9.366 299 0.957 6.68
44.68 0.311 11.3 -1.24 0.672 2.12 -- -- -0.055 10.7 7.27 314 0.733 6.77
51.01 0.333 11.3 -1.27 -- 2.43 -- 0.0491 -0.0589 -- 6.122 324 0.833 7.58
93.42 0.453 11.2 -1.14 2.08 -- 0.496 -- 0.133 7.65 -- -- -- --
94.1 0.454 11.2 -1.12 2.08 -- -- -- 0.132 7.62 -- -- -- --
50.14 0.33 11.3 -1.26 -- 2.45 -- -- -0.0841 -- 4.257 364 0.4 7.9
84.89 0.429 11.3 -- 0.719 1.92 -- -- 0.0925 10.3 7.131 295 0.837 6.88
326.38 0.844 11.3 -1.09 -- -- -- -- 0.164 -- -- -- -- --
127.36 0.528 11.2 -- 2.07 -- -- -- 0.258 7.66 -- -- -- --
91.23 0.445 11.3 -- -- 2.36 -- -- 0.101 -- 0.3803 363 0.45 7.92
357.98 0.883 11.3 -- -- -- -- -- 0.285 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.63 temperature 10.0 270 > th dose dependent rect. 1 7
2 42.87 temperature 10.0 270 > th dose dependent rect. 2 17
7 45.51 radiation 20.0 270 < th dose independent rect. 1 7
8 45.59 radiation 40.0 270 < th dose dependent rect. 1 7
13 46.22 humidity 50.0 270 > th dose dependent rect. 1 7
15 46.34 humidity 70.0 270 > th dose independent rect. 1 7
17 46.47 atmosphere 995.0 270 > th dose independent rect. 7 18
22 46.75 wind 9.0 270 < th dose independent rect. 1 6
23 46.75 temperature 10.0 270 > th dose independent rect. 1 6
25 46.75 temperature 30.0 270 < th dose independent rect. 1 6
26 46.75 humidity 50.0 270 > th dose independent rect. 1 6
28 46.75 atmosphere 995.0 270 > th dose independent rect. 1 6
29 46.75 atmosphere 1015.0 270 < th dose independent rect. 1 6
31 46.75 temperature 10.0 270 > th dose independent rect. 7 18
32 46.76 precipitation 0.1 270 < th dose independent rect. 1 6
33 46.76 precipitation 0.1 270 < th dose dependent rect. 1 6
40 47.14 precipitation 0.1 270 < th dose independent rect. 7 18
41 47.14 precipitation 0.1 270 < th dose dependent rect. 7 18
59 47.47 wind 9.0 270 < th dose independent rect. 7 18
72 48.49 wind 9.0 270 < th dose dependent rect. 1 6
77 48.88 wind 1.0 270 > th dose independent rect. 7 18
85 49.18 temperature 10.0 270 > th dose independent rect. 6 8
86 49.18 atmosphere 995.0 270 > th dose independent rect. 6 8
87 49.18 atmosphere 1015.0 270 < th dose independent rect. 6 8
88 49.18 temperature 10.0 270 > th dose independent rect. 14 16
90 49.35 precipitation 0.1 270 < th dose independent rect. 6 8
91 49.35 wind 9.0 270 < th dose independent rect. 14 16
92 49.35 precipitation 0.1 270 < th dose dependent rect. 6 8
98 49.57 wind 9.0 270 < th dose independent rect. 6 8
102 49.68 temperature 30.0 270 < th dose independent rect. 7 18
109 49.91 precipitation 0.1 270 < th dose independent rect. 2 17
111 49.91 precipitation 0.1 270 < th dose dependent rect. 2 17
113 49.99 temperature 15.0 270 > th dose independent rect. 2 17
115 50.06 radiation 1.0 270 < th dose dependent rect. 18 8
119 50.27 precipitation 0.1 270 < th dose independent rect. 19 7
120 50.27 precipitation 0.1 270 < th dose dependent rect. 19 7
121 50.30 humidity 50.0 270 > th dose independent rect. 7 18
125 50.34 radiation 40.0 270 < th dose independent rect. 14 16
128 50.40 wind 9.0 270 < th dose independent rect. 19 7
129 50.41 temperature 10.0 270 > th dose independent rect. 19 7
130 50.41 temperature 30.0 270 < th dose independent rect. 19 7
131 50.41 humidity 50.0 270 > th dose independent rect. 19 7
132 50.41 atmosphere 995.0 270 > th dose independent rect. 19 7
133 50.41 radiation 1.0 270 < th dose independent rect. 19 7
139 50.41 atmosphere 1015.0 270 < th dose independent rect. 2 17
151 50.49 precipitation 0.1 270 < th dose independent rect. 14 16
152 50.49 precipitation 0.1 270 < th dose dependent rect. 14 16
175 50.66 wind 9.0 270 < th dose independent rect. 2 17
240 51.40 temperature 10.0 270 > th dose dependent rect. 13 18
269 51.84 temperature 10.0 270 > th dose dependent rect. 12 8
278 52.04 wind 1.0 270 > th dose independent rect. 19 7
282 52.07 wind 1.0 270 > th dose independent rect. 6 8
307 52.16 humidity 50.0 90 > th dose dependent rect. 3 8
326 52.27 humidity 50.0 270 > th dose independent rect. 6 8
353 52.59 temperature 10.0 270 > th dose dependent rect. 12 20
354 52.61 temperature 10.0 10 > th dose dependent rect. 3 19
358 52.66 temperature 30.0 270 < th dose independent rect. 7 7
359 52.66 atmosphere 1015.0 270 < th dose dependent rect. 1 6
364 52.70 radiation 1.0 270 > th dose independent rect. 6 8
476 53.33 atmosphere 1015.0 270 < th dose independent rect. 14 17
543 53.91 radiation 1.0 270 < th dose dependent rect. 8 18
551 54.00 atmosphere 1015.0 270 < th dose independent rect. 12 9
579 54.11 atmosphere 995.0 90 > th dose dependent rect. 9 18
588 54.17 temperature 20.0 270 > th dose independent rect. 12 8
601 54.25 temperature 10.0 270 > th dose independent rect. 12 8
603 54.25 temperature 10.0 270 > th dose independent rect. 20 16
604 54.25 atmosphere 995.0 270 > th dose independent rect. 20 16
615 54.30 wind 9.0 270 < th dose independent rect. 12 8
626 54.38 atmosphere 1015.0 270 < th dose dependent rect. 13 18
676 54.55 wind 9.0 270 < th dose independent rect. 20 16
681 54.57 atmosphere 1015.0 90 < th dose dependent rect. 3 6
713 54.66 precipitation 0.1 270 < th dose independent rect. 12 8
714 54.66 precipitation 0.1 270 < th dose dependent rect. 12 8
717 54.68 precipitation 0.1 270 < th dose independent rect. 20 16
719 54.68 precipitation 0.1 270 < th dose dependent rect. 20 16
722 54.71 temperature 10.0 10 > th dose dependent rect. 3 6
753 54.84 atmosphere 995.0 270 > th dose dependent rect. 7 18
761 54.87 radiation 1.0 270 < th dose independent rect. 8 18
782 54.89 temperature 30.0 270 < th dose independent rect. 20 17
811 55.01 radiation 40.0 90 < th dose independent rect. 3 8
835 55.06 humidity 50.0 270 > th dose independent rect. 20 16
911 55.45 wind 1.0 270 > th dose independent rect. 12 8
929 55.56 atmosphere 1015.0 270 < th dose dependent rect. 13 7
977 55.74 atmosphere 1015.0 270 < th dose dependent rect. 3 2