Os08g0178400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0178400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.81 | 0.539 | 4.12 | 2.7 | 1.28 | -1.9 | -0.106 | 1.27 | 0.907 | 3.84 | 18.44 | 998 | -- | -- |
| 133.27 | 0.538 | 4.16 | 2.39 | 1.29 | -1.87 | 0.00832 | -- | 0.82 | 3.86 | 18 | 1001 | -- | -- |
| 131.84 | 0.535 | 4.12 | 2.69 | 1.28 | -1.9 | -- | 1.25 | 0.907 | 3.84 | 18.4 | 997 | -- | -- |
| 133.24 | 0.538 | 4.16 | 2.39 | 1.28 | -1.89 | -- | -- | 0.824 | 3.86 | 18 | 1000 | -- | -- |
| 152.95 | 0.576 | 4.11 | 2.86 | -- | -2.6 | -- | 1.99 | 1 | -- | 17.89 | 334 | -- | -- |
| 207.38 | 0.675 | 4.23 | 1.79 | 1.21 | -- | -0.191 | -- | 0.454 | 5.03 | -- | -- | -- | -- |
| 207.48 | 0.675 | 4.23 | 1.79 | 1.21 | -- | -- | -- | 0.455 | 5.02 | -- | -- | -- | -- |
| 153.92 | 0.578 | 4.15 | 2.43 | -- | -2.78 | -- | -- | 0.888 | -- | 15.68 | 314 | -- | -- |
| 257.58 | 0.747 | 4.26 | -- | 1.36 | -0.82 | -- | -- | 0.281 | 4.51 | 27.6 | 1292 | -- | -- |
| 283.89 | 0.787 | 4.24 | 1.84 | -- | -- | -- | -- | 0.485 | -- | -- | -- | -- | -- |
| 292.06 | 0.799 | 4.28 | -- | 1.24 | -- | -- | -- | 0.255 | 4.97 | -- | -- | -- | -- |
| 293.84 | 0.798 | 4.24 | -- | -- | -1.68 | -- | -- | 0.515 | -- | 21.18 | 326 | -- | -- |
| 372.72 | 0.901 | 4.29 | -- | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.74 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 13 | 118.89 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 17 | 120.05 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 18 | 120.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 20 | 120.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 21 | 120.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 25 | 120.28 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 28 | 120.30 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 44 | 121.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 45 | 121.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 46 | 121.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 60 | 121.93 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 89 | 123.17 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 92 | 124.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 93 | 124.28 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 94 | 124.38 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 97 | 124.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 98 | 124.69 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 100 | 125.02 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 101 | 125.05 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 103 | 125.33 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 104 | 125.79 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 105 | 125.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 107 | 126.16 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 109 | 126.50 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 117 | 126.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 12 |
| 138 | 127.33 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 181 | 127.81 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 185 | 127.85 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 199 | 128.13 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 211 | 128.22 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 214 | 128.24 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 224 | 128.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 369 | 129.45 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 7 |
| 372 | 129.46 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 490 | 130.36 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 552 | 130.91 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 625 | 131.39 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 683 | 131.87 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 688 | 131.89 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 719 | 132.14 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 746 | 132.26 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 779 | 132.41 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 796 | 132.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 986 | 133.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |