Os08g0178000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0178000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.59 | 0.36 | 11 | 0.239 | 0.848 | -0.602 | 0.372 | -0.729 | 0.013 | 17.6 | 39.5 | 74 | -- | -- |
| 59.51 | 0.359 | 11 | 0.251 | 0.844 | -0.522 | 0.406 | -- | 0.0169 | 17.5 | 38.41 | 72 | -- | -- |
| 58.92 | 0.357 | 11 | 0.239 | 0.852 | -0.59 | -- | -0.736 | 0.0152 | 17.6 | 39.49 | 72 | -- | -- |
| 59.92 | 0.361 | 11 | 0.247 | 0.842 | -0.513 | -- | -- | 0.0128 | 17.5 | 37.95 | 72 | -- | -- |
| 84.13 | 0.427 | 11 | 0.101 | -- | -0.786 | -- | -0.274 | -0.0765 | -- | 20.22 | 370 | -- | -- |
| 64.87 | 0.378 | 11 | 0.218 | 0.911 | -- | 0.3 | -- | 0.0386 | 16.8 | -- | -- | -- | -- |
| 65.11 | 0.378 | 11 | 0.219 | 0.913 | -- | -- | -- | 0.0401 | 16.8 | -- | -- | -- | -- |
| 66.47 | 0.38 | 11 | 0.214 | -- | -0.957 | -- | -- | -0.0548 | -- | 0.01999 | 590 | -- | -- |
| 61.45 | 0.365 | 11 | -- | 0.839 | -0.481 | -- | -- | 0.00116 | 17.5 | 37.53 | 72 | -- | -- |
| 109.13 | 0.488 | 11 | 0.185 | -- | -- | -- | -- | 0.0164 | -- | -- | -- | -- | -- |
| 66.37 | 0.381 | 11 | -- | 0.909 | -- | -- | -- | 0.0157 | 16.8 | -- | -- | -- | -- |
| 66.42 | 0.38 | 11 | -- | -- | -0.983 | -- | -- | -0.061 | -- | 0.01994 | 599 | -- | -- |
| 110.04 | 0.49 | 11 | -- | -- | -- | -- | -- | -0.00413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.30 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 15 | 47.17 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 22 | 47.35 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 32 | 48.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 39 | 48.25 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 44 | 48.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 48 | 48.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 54 | 48.69 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 55 | 48.70 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 56 | 48.77 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 57 | 48.78 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 62 | 48.89 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 18 |
| 63 | 48.89 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 64 | 48.91 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 66 | 48.91 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 67 | 48.91 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 68 | 48.91 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 6 |
| 69 | 48.91 | temperature | 10.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 70 | 48.91 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 73 | 48.94 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 74 | 48.94 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 75 | 48.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 76 | 48.94 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 91 | 49.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 92 | 49.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 94 | 49.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 97 | 49.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 104 | 49.16 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 18 |
| 107 | 49.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 109 | 49.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 110 | 49.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 113 | 49.17 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 114 | 49.17 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 115 | 49.17 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 118 | 49.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 123 | 49.21 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 126 | 49.24 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 144 | 49.37 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 145 | 49.37 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 147 | 49.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 148 | 49.38 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 149 | 49.38 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 155 | 49.42 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 159 | 49.44 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 162 | 49.47 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 168 | 49.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 177 | 49.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 178 | 49.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 181 | 49.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 183 | 49.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 186 | 49.60 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 189 | 49.60 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 191 | 49.60 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 192 | 49.60 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 193 | 49.60 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 214 | 49.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 217 | 49.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 222 | 49.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 225 | 49.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 227 | 49.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 228 | 49.72 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 230 | 49.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 319 | 49.98 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 324 | 50.00 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 336 | 50.01 | humidity | 50.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 341 | 50.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 342 | 50.03 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 343 | 50.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 344 | 50.03 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 354 | 50.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 401 | 50.14 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 404 | 50.15 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 405 | 50.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 423 | 50.22 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 446 | 50.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 450 | 50.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 451 | 50.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 455 | 50.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 477 | 50.30 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 479 | 50.31 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 480 | 50.31 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 529 | 50.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 534 | 50.42 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 556 | 50.48 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 561 | 50.50 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 572 | 50.51 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 578 | 50.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 656 | 50.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 657 | 50.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 659 | 50.62 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 661 | 50.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 680 | 50.68 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 707 | 50.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 709 | 50.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 711 | 50.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 715 | 50.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 720 | 50.81 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 735 | 50.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 736 | 50.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 739 | 50.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 744 | 50.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 754 | 50.88 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 770 | 50.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 771 | 50.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 773 | 50.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 779 | 50.92 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 790 | 50.96 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 803 | 51.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 809 | 51.01 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 819 | 51.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 841 | 51.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 851 | 51.08 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 866 | 51.13 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 950 | 51.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 953 | 51.32 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 954 | 51.32 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 958 | 51.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |