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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0176500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.04) R2 : 0.13
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.53 (0.438) R2dE : 0.117 R2E : 0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.217 (0.0842) R2dN8 : 0.014 R2N8 : 0.0128
σ : 0.751
deviance : 259.94
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.012
memory length : 99
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 0.0334

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.7 0.757 2.86 0.0828 0.351 2.48 0.088 -3.58 -0.185 5.65 5 98 18 1.05
261.68 0.753 2.86 0.102 0.351 3.05 0.343 -- -0.18 5.88 5.032 105 18.1 0.982
259.72 0.751 2.86 0.0833 0.351 2.47 -- -3.65 -0.185 5.57 5.001 98 18 1.05
261.36 0.753 2.86 0.103 0.348 3.19 -- -- -0.173 5.54 5.151 103 18.1 0.968
265.18 0.758 2.87 0.099 -- 2.43 -- -3.44 -0.176 -- 5.107 103 18.1 0.967
291.87 0.801 2.88 0.00297 0.118 -- 0.923 -- -0.216 7.21 -- -- -- --
292.44 0.801 2.88 0.0156 0.211 -- -- -- -0.222 3.75 -- -- -- --
262.21 0.754 2.87 0.0665 -- 3.66 -- -- -0.155 -- 5.962 136 18.5 0.0668
261.6 0.753 2.87 -- 0.344 3.18 -- -- -0.196 5.53 5.121 103 18.1 0.951
294.91 0.802 2.88 0.0244 -- -- -- -- -0.216 -- -- -- -- --
292.45 0.8 2.88 -- 0.212 -- -- -- -0.223 3.75 -- -- -- --
259.94 0.751 2.89 -- -- 3.53 -- -- -0.217 -- 6.012 99 18.3 0.0334
294.92 0.802 2.88 -- -- -- -- -- -0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.44 wind 5.0 90 > th dose independent rect. 18 1
2 262.71 wind 5.0 90 > th dose dependent rect. 18 1
79 272.64 wind 1.0 90 < th dose dependent rect. 4 1
80 272.64 wind 5.0 270 > th dose dependent rect. 16 4
82 272.67 wind 1.0 90 < th dose independent rect. 4 1
88 273.21 wind 7.0 270 > th dose independent rect. 16 3
102 274.58 wind 7.0 270 > th dose independent rect. 16 1
108 274.76 atmosphere 1000.0 30 < th dose dependent rect. 9 1
120 275.27 atmosphere 1000.0 90 < th dose dependent rect. 20 3
144 275.75 atmosphere 1000.0 10 < th dose independent rect. 21 1
151 275.75 atmosphere 1000.0 10 < th dose dependent rect. 21 1
168 275.99 atmosphere 1015.0 30 < th dose dependent rect. 19 16
175 276.23 temperature 25.0 10 < th dose independent rect. 20 1
185 276.32 temperature 25.0 90 < th dose independent rect. 18 2
188 276.38 atmosphere 1000.0 90 > th dose independent rect. 20 23
206 276.65 atmosphere 1010.0 10 < th dose dependent rect. 8 3
215 276.85 temperature 25.0 90 > th dose dependent rect. 20 14
234 277.20 temperature 20.0 90 > th dose independent rect. 19 1
266 277.55 temperature 25.0 270 > th dose independent rect. 6 1
289 277.94 wind 7.0 30 > th dose independent rect. 19 13
331 278.51 atmosphere 1000.0 10 < th dose independent rect. 9 1
339 278.54 temperature 25.0 10 > th dose dependent rect. 9 1
341 278.57 temperature 30.0 720 < th dose independent rect. 14 20
349 278.61 atmosphere 1015.0 270 < th dose dependent rect. 16 18
360 278.88 atmosphere 1000.0 1440 < th dose dependent rect. 21 1
363 278.89 atmosphere 1000.0 90 > th dose dependent rect. 19 1
374 278.97 temperature 25.0 90 > th dose dependent rect. 5 5
390 279.22 temperature 25.0 30 > th dose dependent rect. 21 1
401 279.37 temperature 20.0 270 > th dose dependent rect. 6 2
420 279.55 atmosphere 1000.0 270 > th dose independent rect. 15 11
423 279.56 humidity 90.0 90 < th dose independent rect. 19 1
425 279.57 radiation 1.0 43200 < th dose dependent rect. 20 1
431 279.65 atmosphere 1000.0 270 < th dose independent rect. 17 5
434 279.67 humidity 70.0 90 > th dose independent rect. 19 1
438 279.70 atmosphere 995.0 1440 > th dose independent rect. 18 9
446 279.76 atmosphere 995.0 30 > th dose dependent rect. 21 22
447 279.77 atmosphere 1000.0 270 < th dose independent rect. 6 17
448 279.77 wind 5.0 30 > th dose dependent rect. 19 14
452 279.81 humidity 70.0 10 > th dose independent rect. 19 2
456 279.82 atmosphere 1000.0 270 < th dose independent rect. 18 3
464 279.87 atmosphere 1010.0 270 < th dose dependent rect. 6 1
468 279.89 temperature 25.0 30 > th dose independent rect. 9 1
483 280.04 atmosphere 1000.0 90 < th dose dependent rect. 8 6
495 280.10 atmosphere 995.0 1440 > th dose independent rect. 12 8
526 280.24 atmosphere 1000.0 90 > th dose independent rect. 19 1
530 280.25 temperature 10.0 90 > th dose dependent rect. 19 1
555 280.38 atmosphere 995.0 1440 > th dose independent rect. 18 18
559 280.39 atmosphere 1005.0 1440 > th dose independent rect. 7 1
566 280.40 atmosphere 1005.0 1440 < th dose independent rect. 6 1
571 280.41 atmosphere 1000.0 270 > th dose independent rect. 5 21
578 280.42 precipitation 0.1 90 < th dose independent rect. 19 1
583 280.42 precipitation 0.1 90 < th dose dependent rect. 19 1
584 280.43 temperature 10.0 1440 > th dose independent rect. 20 1
587 280.43 temperature 30.0 1440 < th dose independent rect. 20 1
591 280.43 humidity 50.0 1440 > th dose independent rect. 20 1
597 280.43 atmosphere 995.0 1440 > th dose independent rect. 20 1
601 280.43 radiation 1.0 1440 < th dose independent rect. 20 1
621 280.43 temperature 10.0 1440 > th dose independent rect. 21 23
624 280.43 atmosphere 1000.0 1440 < th dose dependent rect. 8 1
641 280.45 temperature 10.0 90 > th dose independent rect. 19 1
644 280.45 humidity 50.0 90 > th dose independent rect. 19 1
647 280.45 atmosphere 1010.0 90 < th dose independent rect. 19 1
649 280.45 radiation 1.0 90 < th dose independent rect. 19 1
655 280.45 temperature 10.0 90 > th dose independent rect. 20 23
656 280.45 radiation 1.0 90 < th dose dependent rect. 19 1
664 280.47 atmosphere 995.0 1440 > th dose independent rect. 18 4
667 280.48 atmosphere 995.0 1440 > th dose independent rect. 3 17
682 280.54 humidity 50.0 720 > th dose independent rect. 17 15
686 280.55 temperature 30.0 4320 < th dose independent rect. 20 13
690 280.56 wind 1.0 90 > th dose independent rect. 18 17
695 280.58 wind 9.0 90 < th dose independent rect. 19 1
696 280.58 temperature 10.0 1440 > th dose independent rect. 12 8
699 280.58 temperature 10.0 1440 > th dose independent rect. 20 16
702 280.58 atmosphere 995.0 1440 > th dose independent rect. 20 16
703 280.58 precipitation 0.1 90 < th dose independent rect. 20 23
706 280.58 precipitation 0.1 90 < th dose dependent rect. 20 23
710 280.60 atmosphere 995.0 1440 > th dose independent rect. 18 1
797 280.74 atmosphere 1005.0 90 > th dose dependent rect. 5 1
807 280.79 humidity 60.0 90 > th dose independent rect. 18 16
814 280.81 wind 7.0 270 > th dose independent rect. 16 9
821 280.81 atmosphere 1000.0 90 < th dose dependent rect. 20 18
823 280.82 precipitation 0.1 10 < th dose independent rect. 21 22
825 280.82 precipitation 0.1 10 < th dose dependent rect. 21 22
826 280.83 temperature 30.0 4320 > th dose independent rect. 15 21
833 280.86 atmosphere 995.0 1440 > th dose independent rect. 16 4
838 280.89 temperature 30.0 4320 < th dose independent rect. 15 21
864 280.98 temperature 30.0 720 < th dose independent rect. 7 10
872 281.00 atmosphere 1000.0 270 > th dose independent rect. 7 23
880 281.04 temperature 30.0 4320 < th dose independent sin 11 NA
887 281.06 atmosphere 995.0 720 > th dose independent rect. 14 20
900 281.10 atmosphere 1000.0 10 < th dose dependent rect. 21 18
912 281.13 humidity 60.0 720 > th dose independent rect. 18 5
918 281.14 temperature 30.0 720 < th dose independent rect. 5 15
932 281.16 temperature 30.0 4320 > th dose independent sin 11 NA
936 281.17 atmosphere 1000.0 720 > th dose independent rect. 20 9
948 281.18 temperature 30.0 720 < th dose independent rect. 22 22
955 281.20 atmosphere 1010.0 90 < th dose independent rect. 18 16
961 281.21 precipitation 0.1 90 > th dose independent rect. 1 2
964 281.21 precipitation 0.1 90 > th dose dependent rect. 1 2
968 281.21 temperature 30.0 4320 > th dose dependent rect. 15 20
986 281.25 humidity 80.0 10 < th dose independent rect. 20 1
998 281.27 humidity 50.0 90 > th dose independent rect. 20 23