Os08g0176200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0176200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 237.87 | 0.725 | 6.68 | 2.14 | 0.846 | -3.25 | 0.714 | -11.3 | 1.31 | 0.31 | 0.3981 | 4326 | 17.8 | 12 |
| 478.95 | 1.02 | 6.68 | 2.08 | 0.868 | -2.74 | 0.955 | -- | 1.39 | 0.299 | 5.21 | 4319 | 17.8 | 12 |
| 238.17 | 0.719 | 6.68 | 2.17 | 0.825 | -3.17 | -- | -11.3 | 1.33 | 0.264 | 0.37 | 4325 | 17.8 | 11.9 |
| 329.69 | 0.846 | 6.74 | 1.91 | 0.753 | -5.19 | -- | -- | 0.867 | 1.25 | 5.482 | 47510 | 17.7 | 11.9 |
| 258.03 | 0.748 | 6.69 | 2.17 | -- | -3.23 | -- | -11.2 | 1.33 | -- | 0.5372 | 4285 | 17.8 | 11.9 |
| 589.99 | 1.14 | 6.61 | -0.957 | 0.962 | -- | 0.913 | -- | 1.33 | 0.838 | -- | -- | -- | -- |
| 593.51 | 1.14 | 6.62 | -0.991 | 0.96 | -- | -- | -- | 1.33 | 0.818 | -- | -- | -- | -- |
| 345.86 | 0.866 | 6.74 | 1.9 | -- | -5.36 | -- | -- | 0.866 | -- | 5.41 | 47439 | 17.7 | 11.9 |
| 263.19 | 0.756 | 6.81 | -- | 0.875 | -4.02 | -- | -- | 0.444 | 0.521 | 5.416 | 47520 | 17.6 | 10.9 |
| 651.01 | 1.19 | 6.6 | -0.956 | -- | -- | -- | -- | 1.34 | -- | -- | -- | -- | -- |
| 619.38 | 1.16 | 6.59 | -- | 0.944 | -- | -- | -- | 1.44 | 0.771 | -- | -- | -- | -- |
| 291.5 | 0.795 | 6.75 | -- | -- | -4.46 | -- | -- | 0.768 | -- | 3.971 | 47421 | 17.6 | 11.9 |
| 675.1 | 1.21 | 6.58 | -- | -- | -- | -- | -- | 1.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 214.38 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 214.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 13 | 214.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 17 | 215.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 18 | 215.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 23 | 217.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 25 | 217.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 30 | 217.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 56 | 224.49 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 169 | 230.23 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 182 | 230.75 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 201 | 231.66 | radiation | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 230 | 232.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 249 | 233.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 260 | 233.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 323 | 235.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 328 | 235.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 333 | 235.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 338 | 236.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 345 | 236.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 387 | 236.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 388 | 236.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 409 | 236.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 525 | 238.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 536 | 238.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 564 | 238.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 577 | 238.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 678 | 239.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 737 | 239.84 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 785 | 239.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 923 | 241.02 | radiation | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 954 | 241.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 955 | 241.14 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 956 | 241.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 980 | 241.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 996 | 241.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 18 |