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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0175700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4 (0.0378) R2 : 0.363
β1 : 1.47 (0.13) R2dD : 0.19 R2D : 0.105
β2 : 0.681 (0.09) R2dC : 0.0831 R2C : 0.028
β3 : -1.11 (0.179) R2dE : 0.0863 R2E : -0.0732
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.858 (0.0951) R2dN8 : 0.249 R2N8 : -0.0298
σ : 0.664
deviance : 203.14
__
_____
C
peak time of C : 15.9
E
wheather : humidity
threshold : 75.96
memory length : 4160
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.19 0.648 4 1.15 0.708 -0.557 0.0597 -3.77 0.605 16.2 69.65 7710 -- --
203.96 0.665 4 1.46 0.691 -0.922 0.0623 -- 0.825 15.9 75.96 4096 -- --
189.69 0.641 4 1.09 0.652 -0.499 -- -3.7 0.598 16.2 69.61 8292 -- --
203.14 0.664 4 1.47 0.681 -1.11 -- -- 0.858 15.9 75.96 4160 -- --
212.64 0.679 3.99 1.04 -- -0.583 -- -3.76 0.599 -- 69.54 8334 -- --
222.31 0.699 4.06 1.52 0.702 -- 0.0432 -- 0.546 16 -- -- -- --
222.31 0.698 4.06 1.52 0.703 -- -- -- 0.546 16 -- -- -- --
228.4 0.704 3.98 1.47 -- -1.15 -- -- 0.851 -- 75 4123 -- --
259.78 0.751 4.02 -- 0.712 -1.09 -- -- 0.803 16.2 92 4276 -- --
249.28 0.738 4.05 1.49 -- -- -- -- 0.527 -- -- -- -- --
283.44 0.788 4.09 -- 0.673 -- -- -- 0.376 16 -- -- -- --
271.3 0.767 4.03 -- -- -1.39 -- -- 0.631 -- 92 6840 -- --
308.17 0.819 4.09 -- -- -- -- -- 0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.26 humidity 70.0 14400 < th dose dependent rect. 16 1
2 186.89 precipitation 0.1 14400 < th dose independent rect. 13 15
3 186.89 precipitation 0.1 14400 < th dose dependent rect. 13 15
4 186.92 precipitation 0.1 14400 > th dose independent rect. 13 15
5 186.94 precipitation 0.1 14400 > th dose independent rect. 15 13
6 186.94 precipitation 0.1 14400 < th dose independent rect. 15 13
7 186.94 precipitation 0.1 14400 < th dose dependent rect. 15 13
24 187.70 humidity 90.0 4320 > th dose dependent rect. 6 4
32 187.96 humidity 70.0 14400 > th dose independent rect. 18 15
41 188.09 humidity 70.0 14400 < th dose dependent rect. 16 16
61 188.29 humidity 70.0 14400 < th dose independent rect. 16 17
76 188.37 radiation 10.0 4320 < th dose dependent rect. 7 1
77 188.37 humidity 70.0 14400 < th dose dependent rect. 16 6
102 188.50 precipitation 0.1 14400 > th dose dependent rect. 5 1
116 188.78 precipitation 0.1 14400 < th dose independent sin 15 NA
117 188.78 humidity 70.0 14400 < th dose independent rect. 18 15
118 188.78 precipitation 0.1 14400 < th dose dependent sin 15 NA
119 188.80 precipitation 0.1 14400 > th dose independent sin 15 NA
125 188.87 humidity 60.0 14400 > th dose independent sin 14 NA
126 188.88 precipitation 0.1 14400 > th dose independent rect. 5 1
127 188.90 humidity 70.0 14400 < th dose independent sin 11 NA
129 188.90 radiation 10.0 4320 < th dose dependent rect. 6 3
132 188.93 humidity 70.0 14400 < th dose dependent sin 13 NA
142 188.99 humidity 60.0 14400 > th dose independent rect. 15 13
148 189.01 humidity 60.0 14400 > th dose independent rect. 15 7
149 189.01 humidity 60.0 14400 > th dose independent rect. 15 10
152 189.02 precipitation 0.1 14400 < th dose independent rect. 5 1
157 189.02 precipitation 0.1 14400 < th dose dependent rect. 5 1
158 189.03 humidity 60.0 14400 < th dose independent rect. 12 1
164 189.09 humidity 60.0 14400 > th dose independent rect. 12 20
167 189.14 humidity 90.0 14400 > th dose independent rect. 20 4
168 189.15 humidity 70.0 14400 > th dose independent sin 11 NA
174 189.17 humidity 60.0 14400 > th dose independent rect. 12 16
178 189.18 humidity 60.0 14400 > th dose independent rect. 12 10
207 189.31 humidity 60.0 14400 < th dose independent rect. 16 1
213 189.37 humidity 70.0 14400 > th dose independent rect. 17 11
216 189.38 humidity 70.0 14400 > th dose independent rect. 17 4
220 189.38 humidity 60.0 14400 < th dose independent rect. 12 20
222 189.39 humidity 60.0 14400 < th dose independent sin 14 NA
227 189.39 precipitation 0.1 14400 > th dose dependent rect. 3 4
239 189.43 humidity 80.0 14400 < th dose independent rect. 16 1
245 189.45 humidity 60.0 14400 < th dose independent rect. 12 10
273 189.55 humidity 70.0 14400 > th dose independent rect. 17 2
280 189.60 humidity 70.0 14400 < th dose independent rect. 17 5
350 189.72 radiation 10.0 4320 < th dose dependent rect. 18 15
358 189.76 precipitation 0.1 14400 > th dose dependent rect. 13 15
379 189.80 humidity 60.0 14400 > th dose independent rect. 12 1
397 189.85 precipitation 0.1 14400 < th dose independent rect. 3 4
402 189.85 precipitation 0.1 14400 < th dose dependent rect. 3 4
427 189.95 humidity 90.0 14400 > th dose independent rect. 22 1
439 189.99 precipitation 0.1 14400 > th dose independent rect. 3 4
474 190.12 precipitation 0.1 14400 > th dose dependent rect. 16 12
477 190.13 radiation 10.0 4320 < th dose dependent rect. 1 8
491 190.16 radiation 10.0 4320 < th dose dependent rect. 20 13
548 190.28 humidity 80.0 14400 < th dose independent rect. 13 5
580 190.34 humidity 80.0 14400 > th dose independent rect. 10 9
628 190.45 humidity 80.0 14400 > th dose independent rect. 12 7
735 190.74 humidity 80.0 14400 < th dose independent rect. 10 9
737 190.74 humidity 50.0 14400 > th dose dependent rect. 16 6
772 190.85 precipitation 0.1 14400 > th dose independent rect. 15 23
786 190.86 precipitation 0.1 14400 < th dose independent rect. 15 23
787 190.86 precipitation 0.1 14400 < th dose dependent rect. 15 23
792 190.89 precipitation 0.1 14400 > th dose independent no NA NA
793 190.89 precipitation 0.1 14400 < th dose independent no NA NA
811 190.89 precipitation 0.1 14400 < th dose dependent no NA NA
858 191.02 precipitation 0.1 14400 > th dose independent rect. 2 23
860 191.02 precipitation 0.1 14400 > th dose independent rect. 21 23
861 191.02 precipitation 0.1 14400 < th dose independent rect. 2 23
867 191.02 precipitation 0.1 14400 < th dose dependent rect. 2 23
870 191.03 precipitation 0.1 14400 < th dose independent rect. 21 23
872 191.03 precipitation 0.1 14400 < th dose dependent rect. 21 23
875 191.05 humidity 50.0 14400 > th dose dependent rect. 16 1
929 191.14 humidity 80.0 14400 > th dose independent rect. 14 1
956 191.19 wind 1.0 43200 < th dose independent rect. 1 2
977 191.23 humidity 90.0 14400 < th dose independent rect. 20 3
1000 191.27 precipitation 0.1 14400 > th dose independent rect. 19 23