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Os08g0175300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PolI-like DNA polymerase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.05 (0.0232) R2 : 0.724
β1 : 0.924 (0.0848) R2dD : 0.0746 R2D : 0.0549
β2 : 1.99 (0.0603) R2dC : 0.664 R2C : 0.646
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.214 (0.0494) R2dN8 : 0.0152 R2N8 : -0.00617
σ : 0.435
deviance : 86.45
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.54 0.392 9.05 0.92 1.72 -0.469 1.18 -0.616 0.203 17.9 70.42 83 -- --
70.96 0.392 9.05 0.909 1.75 -0.47 1.33 -- 0.209 17.8 69.88 94 -- --
72.78 0.397 9.05 0.922 1.7 -0.497 -- -0.814 0.206 17.9 70 82 -- --
75.31 0.404 9.05 0.891 1.73 -0.511 -- -- 0.216 17.9 69.74 94 -- --
142.14 0.555 9.03 0.867 -- -1.52 -- -1.3 0.107 -- 74 367 -- --
80.43 0.42 9.05 0.928 1.98 -- 1.56 -- 0.207 17.4 -- -- -- --
86.45 0.435 9.05 0.924 1.99 -- -- -- 0.214 17.4 -- -- -- --
146.76 0.564 9.04 0.778 -- -1.55 -- -- 0.0848 -- 74.4 372 -- --
96.36 0.457 9.07 -- 1.75 -0.508 -- -- 0.126 17.9 69 102 -- --
293.65 0.801 9.02 0.857 -- -- -- -- 0.165 -- -- -- -- --
108.98 0.488 9.07 -- 1.98 -- -- -- 0.111 17.4 -- -- -- --
162.7 0.594 9.06 -- -- -1.56 -- -- -0.00218 -- 74.53 367 -- --
313.02 0.826 9.04 -- -- -- -- -- 0.0699 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.89 wind 7.0 270 < th dose independent rect. 7 21
2 62.18 wind 7.0 270 < th dose independent rect. 9 18
3 62.19 humidity 70.0 90 > th dose independent rect. 5 18
4 62.25 wind 7.0 270 < th dose independent rect. 7 10
12 63.34 radiation 40.0 270 < th dose dependent rect. 3 7
13 63.50 humidity 70.0 90 > th dose independent rect. 5 6
20 63.78 temperature 30.0 90 < th dose independent rect. 5 18
21 63.87 temperature 10.0 270 > th dose dependent rect. 7 9
22 63.94 radiation 30.0 270 < th dose dependent rect. 15 18
24 64.00 radiation 20.0 270 < th dose independent rect. 3 6
26 64.07 radiation 20.0 270 < th dose independent rect. 15 17
28 64.08 radiation 40.0 270 < th dose dependent rect. 3 18
37 64.39 wind 9.0 270 < th dose dependent rect. 7 21
43 64.52 wind 9.0 270 < th dose dependent rect. 8 19
46 64.55 humidity 50.0 90 > th dose dependent rect. 5 18
61 64.78 radiation 40.0 90 < th dose independent rect. 5 18
63 64.79 humidity 70.0 270 > th dose independent rect. 3 7
65 64.82 humidity 70.0 90 > th dose independent rect. 5 8
66 64.82 temperature 10.0 90 > th dose dependent rect. 9 20
76 64.94 radiation 10.0 270 < th dose independent rect. 3 18
79 64.95 humidity 50.0 10 > th dose dependent rect. 6 17
94 65.08 humidity 70.0 90 > th dose independent rect. 5 10
98 65.10 temperature 30.0 90 < th dose dependent rect. 5 17
104 65.15 radiation 40.0 270 < th dose independent rect. 3 18
117 65.29 temperature 10.0 270 > th dose dependent rect. 7 20
121 65.34 temperature 30.0 270 < th dose independent rect. 3 17
128 65.39 humidity 50.0 270 > th dose dependent rect. 3 17
148 65.52 radiation 10.0 270 < th dose independent rect. 4 16
155 65.57 wind 7.0 270 < th dose independent rect. 22 15
201 65.85 humidity 50.0 270 > th dose dependent rect. 21 6
206 65.89 humidity 50.0 270 > th dose dependent rect. 3 8
223 65.99 radiation 30.0 90 < th dose independent rect. 5 5
233 66.02 humidity 90.0 10 < th dose independent rect. 5 4
244 66.09 radiation 1.0 90 < th dose dependent rect. 23 17
249 66.11 radiation 1.0 90 < th dose dependent rect. 23 11
251 66.13 radiation 1.0 90 < th dose independent rect. 23 8
270 66.21 wind 9.0 270 < th dose dependent rect. 22 15
302 66.35 radiation 1.0 90 > th dose independent rect. 4 5
321 66.37 temperature 30.0 10 < th dose dependent rect. 6 17
326 66.39 radiation 1.0 90 < th dose independent rect. 23 11
328 66.39 humidity 70.0 90 > th dose independent rect. 17 18
336 66.41 atmosphere 1015.0 270 < th dose independent rect. 3 18
355 66.45 radiation 40.0 10 < th dose dependent rect. 6 17
359 66.46 wind 9.0 270 < th dose dependent rect. 21 6
371 66.50 radiation 1.0 90 < th dose independent rect. 23 16
372 66.51 wind 7.0 270 < th dose independent rect. 21 6
377 66.52 temperature 10.0 10 > th dose dependent rect. 9 21
385 66.54 wind 9.0 270 < th dose dependent rect. 8 9
403 66.60 radiation 40.0 270 < th dose independent rect. 12 10
409 66.63 humidity 50.0 270 > th dose independent rect. 16 15
425 66.68 radiation 20.0 10 < th dose independent rect. 6 17
430 66.69 atmosphere 1015.0 90 < th dose independent rect. 5 18
432 66.70 wind 1.0 270 > th dose independent rect. 3 5
447 66.75 precipitation 0.1 270 < th dose independent rect. 8 19
449 66.75 precipitation 0.1 270 < th dose dependent rect. 8 19
455 66.79 radiation 1.0 90 < th dose dependent sin 9 NA
462 66.81 radiation 1.0 90 > th dose independent sin 9 NA
465 66.81 wind 7.0 10 < th dose independent rect. 9 21
479 66.87 precipitation 0.1 270 < th dose independent rect. 3 5
483 66.87 precipitation 0.1 270 < th dose dependent rect. 3 5
511 66.96 atmosphere 1000.0 90 > th dose independent rect. 23 6
512 66.96 precipitation 0.1 270 < th dose independent rect. 21 6
513 66.96 precipitation 0.1 270 < th dose dependent rect. 21 6
515 66.97 humidity 90.0 270 < th dose independent rect. 8 8
525 66.99 atmosphere 995.0 270 > th dose dependent rect. 22 5
526 67.00 temperature 10.0 270 > th dose independent rect. 21 6
527 67.00 temperature 30.0 270 < th dose independent rect. 21 6
528 67.00 humidity 50.0 270 > th dose independent rect. 21 6
531 67.00 atmosphere 995.0 270 > th dose independent rect. 21 6
533 67.00 radiation 1.0 270 < th dose independent rect. 21 6
540 67.00 temperature 10.0 270 > th dose independent rect. 3 18
542 67.00 radiation 1.0 270 < th dose dependent rect. 21 6
556 67.03 temperature 30.0 270 < th dose independent rect. 3 6
574 67.07 temperature 15.0 270 > th dose independent rect. 7 10
584 67.09 wind 5.0 270 < th dose independent rect. 4 3
586 67.09 precipitation 0.1 270 < th dose independent rect. 7 21
588 67.09 precipitation 0.1 270 < th dose dependent rect. 7 21
589 67.10 radiation 1.0 90 < th dose independent sin 9 NA
598 67.11 precipitation 0.1 270 < th dose independent rect. 4 3
600 67.11 precipitation 0.1 270 < th dose dependent rect. 4 3
608 67.13 humidity 50.0 90 > th dose dependent rect. 5 6
619 67.17 precipitation 0.1 270 < th dose independent rect. 7 10
621 67.17 precipitation 0.1 270 < th dose dependent rect. 7 10
633 67.20 temperature 30.0 90 < th dose independent rect. 17 16
647 67.24 wind 7.0 270 < th dose independent rect. 3 5
670 67.28 humidity 70.0 270 > th dose independent rect. 4 3
675 67.29 temperature 10.0 270 > th dose independent rect. 4 3
677 67.29 temperature 30.0 270 < th dose independent rect. 4 3
678 67.29 humidity 50.0 270 > th dose independent rect. 4 3
680 67.29 atmosphere 995.0 270 > th dose independent rect. 4 3
681 67.29 atmosphere 1015.0 270 < th dose independent rect. 4 3
686 67.29 temperature 10.0 270 > th dose independent rect. 7 21
697 67.32 humidity 60.0 90 > th dose dependent rect. 5 8
708 67.35 temperature 10.0 270 > th dose independent rect. 3 5
713 67.35 atmosphere 995.0 270 > th dose independent rect. 3 5
714 67.35 atmosphere 1015.0 270 < th dose independent rect. 3 5
719 67.35 temperature 10.0 270 > th dose independent rect. 8 19
723 67.36 wind 7.0 90 < th dose independent rect. 23 6
741 67.39 humidity 70.0 90 < th dose independent sin 1 NA
764 67.42 temperature 10.0 90 > th dose independent rect. 23 6
765 67.42 temperature 30.0 90 < th dose independent rect. 23 6
766 67.42 humidity 50.0 90 > th dose independent rect. 23 6
774 67.42 temperature 10.0 90 > th dose independent rect. 5 18
779 67.42 humidity 50.0 10 > th dose dependent rect. 6 14
852 67.56 humidity 70.0 90 > th dose independent sin 1 NA
880 67.62 precipitation 0.1 270 < th dose independent rect. 3 18
881 67.62 precipitation 0.1 270 < th dose dependent rect. 3 18
883 67.63 wind 1.0 270 > th dose independent rect. 4 3
890 67.65 humidity 90.0 270 < th dose independent rect. 5 2
898 67.66 atmosphere 1015.0 270 < th dose independent rect. 7 10
899 67.66 temperature 10.0 270 > th dose independent rect. 17 14
980 67.76 wind 7.0 270 < th dose independent rect. 20 8