Os08g0174800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Somatic embryogenesis receptor-like kinase.
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Os08g0174800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Somatic embryogenesis receptor-like kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.29 | 0.323 | 12.5 | -0.174 | 0.905 | -0.636 | 0.398 | 0.699 | 0.343 | 1.36 | 2.841 | 78 | -- | -- |
| 48.09 | 0.323 | 12.5 | -0.184 | 0.838 | -0.663 | -0.264 | -- | 0.37 | 1.27 | 2.691 | 77 | -- | -- |
| 47.44 | 0.321 | 12.5 | -0.179 | 0.89 | -0.645 | -- | 0.403 | 0.347 | 1.36 | 2.69 | 77 | -- | -- |
| 48.43 | 0.324 | 12.5 | -0.184 | 0.907 | -0.628 | -- | -- | 0.341 | 1.32 | 2.7 | 77 | -- | -- |
| 57.62 | 0.354 | 12.5 | -0.271 | -- | -1.19 | -- | 0.415 | 0.191 | -- | 2.33 | 146 | -- | -- |
| 55.17 | 0.348 | 12.5 | -0.199 | 1.63 | -- | -0.357 | -- | 0.289 | 0.901 | -- | -- | -- | -- |
| 55.71 | 0.35 | 12.5 | -0.186 | 1.63 | -- | -- | -- | 0.29 | 0.91 | -- | -- | -- | -- |
| 54.49 | 0.344 | 12.5 | -0.139 | -- | -1.27 | -- | -- | 0.307 | -- | 1.481 | 164 | -- | -- |
| 49.32 | 0.327 | 12.5 | -- | 0.893 | -0.639 | -- | -- | 0.362 | 1.32 | 2.487 | 78 | -- | -- |
| 220.74 | 0.694 | 12.5 | -0.125 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 56.62 | 0.352 | 12.5 | -- | 1.62 | -- | -- | -- | 0.311 | 0.905 | -- | -- | -- | -- |
| 54.27 | 0.343 | 12.4 | -- | -- | -1.32 | -- | -- | 0.362 | -- | 1.52 | 153 | -- | -- |
| 221.15 | 0.694 | 12.5 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.25 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 2 | 47.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 4 | 47.43 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 7 | 47.78 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 10 | 47.91 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 12 | 47.93 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 14 | 47.95 | humidity | 50.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 15 | 47.98 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 16 | 47.98 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 17 | 47.98 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 18 | 47.99 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 19 | 47.99 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 20 | 48.00 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 21 | 48.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 24 | 48.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 26 | 48.09 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 29 | 48.11 | humidity | 50.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 33 | 48.16 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 41 | 48.19 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 63 | 48.23 | humidity | 50.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 64 | 48.23 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 67 | 48.24 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 72 | 48.26 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 21 |
| 76 | 48.27 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 78 | 48.27 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 79 | 48.28 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 82 | 48.29 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 84 | 48.29 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 87 | 48.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 93 | 48.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 104 | 48.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 110 | 48.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 112 | 48.33 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 113 | 48.33 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 114 | 48.33 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 5 |
| 119 | 48.35 | wind | 1.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 120 | 48.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 124 | 48.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 129 | 48.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 130 | 48.36 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 132 | 48.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 134 | 48.37 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 142 | 48.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 148 | 48.41 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 167 | 48.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 191 | 48.49 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 192 | 48.50 | humidity | 50.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 202 | 48.51 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 203 | 48.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 6 |
| 230 | 48.55 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 257 | 48.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 258 | 48.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 264 | 48.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 265 | 48.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 266 | 48.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 272 | 48.62 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 273 | 48.62 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 277 | 48.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 284 | 48.63 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 285 | 48.64 | wind | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 300 | 48.66 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 18 |
| 309 | 48.68 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 333 | 48.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 349 | 48.72 | temperature | 25.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 350 | 48.72 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 354 | 48.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 359 | 48.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 397 | 48.79 | radiation | 1.0 | 30 | > th | dose independent | sin | 0 | NA |
| 398 | 48.79 | temperature | 30.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 399 | 48.79 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 3 |
| 406 | 48.79 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 412 | 48.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 415 | 48.80 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 9 |
| 441 | 48.82 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 14 |
| 444 | 48.82 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 6 | 10 |
| 455 | 48.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 470 | 48.85 | temperature | 25.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 490 | 48.87 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 500 | 48.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 522 | 48.90 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 3 |
| 532 | 48.91 | wind | 7.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 535 | 48.91 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 544 | 48.91 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 15 |
| 552 | 48.92 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 564 | 48.92 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 567 | 48.93 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 568 | 48.93 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 593 | 48.94 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 11 |
| 610 | 48.96 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 14 |
| 640 | 48.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 663 | 48.98 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 664 | 48.98 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 674 | 48.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 686 | 49.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 8 |
| 689 | 49.01 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 729 | 49.01 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 22 |
| 742 | 49.01 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 754 | 49.02 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 22 | NA |
| 760 | 49.03 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 805 | 49.05 | humidity | 60.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 864 | 49.08 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 897 | 49.11 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 899 | 49.11 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 6 |