Os08g0174700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SERK1 (Fragment).
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Os08g0174700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SERK1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.82 | 0.261 | 10.5 | 0.653 | 1.07 | -0.911 | 0.414 | 2.18 | 0.235 | 1.93 | 23.11 | 1375 | -- | -- |
| 32.8 | 0.267 | 10.5 | 0.15 | 1.02 | -0.778 | 0.433 | -- | 0.191 | 2.01 | 21.2 | 8746 | -- | -- |
| 31.45 | 0.261 | 10.5 | 0.666 | 1.09 | -0.925 | -- | 2.34 | 0.238 | 1.91 | 23.11 | 1340 | -- | -- |
| 33.1 | 0.27 | 10.5 | -0.035 | 0.564 | -1.14 | -- | -- | 0.0918 | 1.46 | 21.2 | 8746 | -- | -- |
| 48.5 | 0.326 | 10.5 | 0.177 | -- | -1.66 | -- | 0.937 | 0.181 | -- | 23.11 | 1340 | -- | -- |
| 52.88 | 0.341 | 10.6 | -0.258 | 0.991 | -- | 0.413 | -- | -0.0971 | 1.91 | -- | -- | -- | -- |
| 53.54 | 0.343 | 10.6 | -0.271 | 0.991 | -- | -- | -- | -0.0995 | 1.9 | -- | -- | -- | -- |
| 45.89 | 0.316 | 10.5 | 0.0725 | -- | -1.68 | -- | -- | 0.2 | -- | 20.8 | 13 | -- | -- |
| 33.13 | 0.27 | 10.5 | -- | 0.559 | -1.15 | -- | -- | 0.0974 | 1.46 | 21.2 | 8746 | -- | -- |
| 112.92 | 0.497 | 10.6 | -0.23 | -- | -- | -- | -- | -0.0766 | -- | -- | -- | -- | -- |
| 55.47 | 0.348 | 10.6 | -- | 0.986 | -- | -- | -- | -0.0693 | 1.89 | -- | -- | -- | -- |
| 46.11 | 0.316 | 10.5 | -- | -- | -1.65 | -- | -- | 0.188 | -- | 20.79 | 12 | -- | -- |
| 114.31 | 0.499 | 10.6 | -- | -- | -- | -- | -- | -0.0511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 2 | 31.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 19 | 31.44 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 156 | 31.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 168 | 31.76 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 200 | 31.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 214 | 31.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 217 | 32.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 231 | 32.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 243 | 32.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 251 | 32.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 254 | 32.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 255 | 32.20 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 278 | 32.29 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 305 | 32.39 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 306 | 32.39 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 314 | 32.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 324 | 32.43 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 330 | 32.44 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 339 | 32.47 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 342 | 32.48 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 349 | 32.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 350 | 32.49 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 366 | 32.52 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 374 | 32.53 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 375 | 32.53 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 405 | 32.56 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 414 | 32.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 423 | 32.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 478 | 32.64 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 479 | 32.64 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 499 | 32.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 510 | 32.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 512 | 32.67 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 645 | 32.81 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 717 | 32.90 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 768 | 32.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 769 | 32.96 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 845 | 33.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 847 | 33.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 858 | 33.05 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 892 | 33.08 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 894 | 33.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 917 | 33.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 936 | 33.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 951 | 33.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 968 | 33.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 977 | 33.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 983 | 33.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |