Os08g0174100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transferase family protein.
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Os08g0174100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 421.32 | 0.964 | 11.9 | 3.46 | 5.87 | 1.86 | -2.1 | -2.96 | -0.191 | 7.37 | 20 | 1361 | 5.11 | 1.35 |
| 465.77 | 1.01 | 12 | 2.33 | 5.86 | 1.92 | -2.59 | -- | -0.475 | 7.38 | 20.04 | 1347 | 5.4 | 1.42 |
| 432.79 | 0.969 | 11.9 | 3.35 | 5.87 | 1.85 | -- | -2.83 | -0.206 | 7.41 | 19.99 | 1360 | 5.15 | 1.36 |
| 470.32 | 1.01 | 12 | 2.31 | 5.82 | 1.84 | -- | -- | -0.466 | 7.42 | 20 | 1342 | 5.45 | 1.22 |
| 2156.44 | 2.16 | 12.1 | 3.51 | -- | 2.17 | -- | -2.95 | -0.0756 | -- | 19.9 | 1861 | 5 | 1.06 |
| 671.91 | 1.22 | 12.1 | 1.66 | 5.8 | -- | -1.48 | -- | -1.07 | 7.45 | -- | -- | -- | -- |
| 677.88 | 1.22 | 12.1 | 1.63 | 5.8 | -- | -- | -- | -1.06 | 7.47 | -- | -- | -- | -- |
| 938.8 | 1.43 | 12.5 | 2.19 | -- | 3.84 | -- | -- | -1.19 | -- | 26.94 | 724 | 1.65 | 0.483 |
| 592.09 | 1.13 | 12 | -- | 5.84 | 1.67 | -- | -- | -0.551 | 7.45 | 19.59 | 1351 | 5.37 | 0.767 |
| 2474.49 | 2.32 | 12.3 | 1.72 | -- | -- | -- | -- | -0.972 | -- | -- | -- | -- | -- |
| 747.84 | 1.28 | 12.2 | -- | 5.81 | -- | -- | -- | -1.25 | 7.45 | -- | -- | -- | -- |
| 948.55 | 1.43 | 12.3 | -- | -- | 3.95 | -- | -- | -1.19 | -- | 36.87 | 2183 | 0.00978 | 2.88 |
| 2552.46 | 2.36 | 12.3 | -- | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 434.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 437.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 10 | 450.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 11 | 451.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 21 | 452.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 67 | 456.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 69 | 456.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 112 | 459.02 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 144 | 460.37 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 171 | 460.84 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 173 | 460.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 176 | 460.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 177 | 460.94 | radiation | 40 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 200 | 461.61 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 242 | 462.91 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 244 | 462.96 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 256 | 463.21 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 271 | 463.52 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 401 | 466.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 495 | 468.94 | temperature | 25 | 270 | < th | dose dependent | sin | 19 | NA |
| 515 | 469.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 557 | 470.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 598 | 471.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 682 | 473.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 688 | 473.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 16 |
| 736 | 474.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 806 | 475.69 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 927 | 477.42 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 985 | 478.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 990 | 478.11 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 5 |