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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0174000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0405) R2 : 0.00495
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.128 (0.0852) R2dN8 : 0.00639 R2N8 : 0.00495
σ : 0.762
deviance : 266.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.33 0.733 2.96 0.433 0.138 -2.57 -0.257 -1.76 -0.0531 2.38 1015 837 -- --
244.6 0.728 2.96 0.457 0.164 -2.17 -0.258 -- -0.0533 2.32 1015 905 -- --
242.87 0.726 2.97 0.469 0.142 -2.9 -- -1.86 -0.0446 2 1015 978 -- --
244.82 0.729 2.96 0.461 0.162 -2.1 -- -- -0.0536 2.46 1015 897 -- --
243.18 0.726 2.97 0.463 -- -4.23 -- -4.86 -0.0488 -- 1015 1087 -- --
262.28 0.759 2.97 0.341 0.151 -- 0.0681 -- -0.0934 2.69 -- -- -- --
262.3 0.758 2.97 0.339 0.151 -- -- -- -0.0938 2.67 -- -- -- --
246.22 0.731 2.96 0.464 -- -2.01 -- -- -0.046 -- 1015 847 -- --
250.18 0.737 2.97 -- 0.163 -1.85 -- -- -0.102 2.57 1015 839 -- --
263.63 0.759 2.97 0.345 -- -- -- -- -0.09 -- -- -- -- --
265.33 0.762 2.97 -- 0.158 -- -- -- -0.132 2.7 -- -- -- --
251.57 0.739 2.97 -- -- -1.67 -- -- -0.1 -- 1015 791 -- --
266.77 0.762 2.97 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.14 humidity 90 30 > th dose dependent rect. 9 11
3 238.27 humidity 90 30 > th dose dependent rect. 11 9
9 239.21 humidity 90 30 > th dose independent rect. 9 12
13 239.37 humidity 90 30 > th dose independent rect. 11 10
17 239.59 temperature 15 90 > th dose dependent rect. 3 22
18 240.10 temperature 20 10 < th dose dependent sin 20 NA
19 240.35 atmosphere 1015 720 > th dose independent rect. 24 3
39 240.38 atmosphere 1015 720 > th dose dependent rect. 24 2
61 240.54 atmosphere 1015 720 > th dose dependent sin 2 NA
62 240.56 temperature 25 1440 < th dose dependent rect. 6 1
63 240.58 atmosphere 1015 720 > th dose independent sin 2 NA
69 240.74 atmosphere 1015 720 < th dose independent sin 4 NA
97 241.10 atmosphere 1015 720 < th dose independent rect. 23 16
132 241.48 temperature 10 1440 > th dose dependent rect. 5 2
134 241.49 temperature 20 270 < th dose dependent rect. 11 8
139 241.60 humidity 90 270 > th dose dependent rect. 10 10
143 241.62 atmosphere 1015 1440 > th dose dependent rect. 14 10
197 242.09 humidity 90 270 > th dose dependent rect. 11 6
219 242.19 temperature 25 90 < th dose dependent rect. 4 21
250 242.23 temperature 15 270 > th dose dependent rect. 3 20
275 242.32 atmosphere 1015 1440 > th dose dependent sin 13 NA
280 242.38 temperature 20 90 < th dose dependent rect. 11 10
284 242.39 temperature 30 90 < th dose dependent rect. 9 21
302 242.45 temperature 20 90 > th dose independent rect. 3 22
315 242.54 temperature 20 270 > th dose independent rect. 9 13
319 242.55 humidity 60 43200 > th dose independent rect. 5 10
342 242.62 humidity 50 1440 < th dose independent rect. 11 2
372 242.67 humidity 70 43200 < th dose dependent rect. 15 1
380 242.69 humidity 70 43200 < th dose dependent rect. 13 3
385 242.70 temperature 30 90 < th dose dependent rect. 7 23
396 242.73 temperature 20 270 > th dose independent rect. 4 18
404 242.75 temperature 20 10 < th dose dependent rect. 9 12
406 242.76 humidity 60 43200 > th dose independent rect. 12 12
430 242.83 humidity 60 43200 < th dose independent rect. 12 12
441 242.86 temperature 20 270 > th dose independent rect. 3 20
448 242.86 temperature 25 270 < th dose dependent rect. 8 13
459 242.88 humidity 60 43200 > th dose independent rect. 22 18
466 242.89 temperature 25 90 < th dose dependent rect. 10 15
467 242.89 temperature 25 90 < th dose dependent rect. 4 23
482 242.91 humidity 60 43200 > th dose independent sin 0 NA
493 242.93 humidity 60 43200 > th dose independent rect. 12 19
527 242.97 humidity 80 43200 < th dose dependent rect. 6 12
534 242.99 atmosphere 1015 720 < th dose independent rect. 20 15
557 243.02 humidity 60 43200 > th dose independent rect. 5 19
581 243.04 humidity 60 43200 < th dose independent rect. 12 18
626 243.07 temperature 25 10 < th dose dependent rect. 5 19
657 243.10 atmosphere 1015 1440 < th dose independent rect. 22 3
718 243.15 humidity 50 720 < th dose dependent sin 7 NA
736 243.16 humidity 80 43200 < th dose dependent sin 23 NA
769 243.18 humidity 60 43200 < th dose independent rect. 12 4
784 243.18 humidity 80 43200 < th dose dependent rect. 12 11
805 243.20 humidity 60 43200 < th dose independent rect. 5 11
821 243.21 atmosphere 1015 720 < th dose independent rect. 21 8
993 243.31 humidity 60 43200 < th dose independent sin 20 NA