Os08g0173600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0173600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 647.24 | 1.2 | 6.72 | 0.668 | 1.15 | 4.59 | -0.62 | 5.29 | 0.9 | 0.631 | 1.24 | 13020 | -- | -- |
| 720.51 | 1.25 | 6.85 | 0.591 | 1.34 | 3.99 | -0.433 | -- | 1.09 | 0.445 | 1.651 | 11478 | -- | -- |
| 637.98 | 1.18 | 6.74 | 0.629 | 1.19 | 4.65 | -- | 5.38 | 0.794 | 0.523 | 1.2 | 15940 | -- | -- |
| 654.94 | 1.19 | 6.98 | -0.305 | 1.53 | 4.9 | -- | -- | 0.225 | 0.168 | 1.8 | 16030 | -- | -- |
| 678.03 | 1.21 | 6.79 | 0.556 | -- | 4.9 | -- | 5.25 | 0.652 | -- | 1.208 | 15647 | -- | -- |
| 1040.45 | 1.51 | 6.62 | 0.849 | 1.15 | -- | -0.454 | -- | 1.76 | 0.892 | -- | -- | -- | -- |
| 1041.28 | 1.51 | 6.62 | 0.865 | 1.15 | -- | -- | -- | 1.76 | 0.985 | -- | -- | -- | -- |
| 679.08 | 1.21 | 7.01 | -1.11 | -- | 4.67 | -- | -- | -0.0372 | -- | 1.49 | 19936 | -- | -- |
| 658.14 | 1.19 | 7.02 | -- | 1.57 | 4.61 | -- | -- | 0.328 | 0.234 | 1.783 | 16046 | -- | -- |
| 1123.95 | 1.57 | 6.6 | 0.908 | -- | -- | -- | -- | 1.78 | -- | -- | -- | -- | -- |
| 1061.01 | 1.52 | 6.64 | -- | 1.17 | -- | -- | -- | 1.66 | 1.02 | -- | -- | -- | -- |
| 684.51 | 1.22 | 6.99 | -- | -- | 4.69 | -- | -- | 0.141 | -- | 1.775 | 15612 | -- | -- |
| 1145.71 | 1.58 | 6.62 | -- | -- | -- | -- | -- | 1.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 633.66 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 634.05 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 12 | 634.46 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 14 | 634.57 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 24 | 634.73 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 6 | 14 |
| 48 | 634.97 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 51 | 634.99 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 76 | 635.19 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 86 | 635.28 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 96 | 635.33 | temperature | 10.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 101 | 635.36 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 102 | 635.36 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 6 | 14 |
| 214 | 635.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 215 | 635.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 249 | 636.09 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 268 | 636.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 275 | 636.18 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 347 | 636.47 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 630 | 637.84 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 679 | 638.05 | temperature | 10.0 | 43200 | > th | dose dependent | no | NA | NA |
| 692 | 638.11 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 701 | 638.14 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 708 | 638.17 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 710 | 638.17 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 717 | 638.20 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 740 | 638.27 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 763 | 638.34 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 781 | 638.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 802 | 638.48 | temperature | 30.0 | 43200 | < th | dose dependent | no | NA | NA |
| 819 | 638.54 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 820 | 638.55 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 850 | 638.68 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 982 | 639.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |