Os08g0172200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UvrB/UvrC protein domain containing protein.
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Os08g0172200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UvrB/UvrC protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.69 | 0.296 | 11.7 | -0.303 | 1.27 | -0.496 | 0.587 | -0.000465 | -0.493 | 17.3 | 8.45 | 110 | -- | -- |
| 39.69 | 0.293 | 11.7 | -0.303 | 1.27 | -0.496 | 0.587 | -- | -0.493 | 17.3 | 8.45 | 110 | -- | -- |
| 40.5 | 0.296 | 11.7 | -0.304 | 1.27 | -0.502 | -- | -0.0819 | -0.485 | 17.3 | 8.449 | 110 | -- | -- |
| 40.56 | 0.297 | 11.7 | -0.303 | 1.27 | -0.497 | -- | -- | -0.489 | 17.3 | 8.44 | 110 | -- | -- |
| 48.81 | 0.325 | 11.7 | -0.574 | -- | -1.51 | -- | -0.279 | -0.583 | -- | 0.5631 | 524 | -- | -- |
| 45.31 | 0.316 | 11.7 | -0.328 | 1.56 | -- | 0.531 | -- | -0.481 | 16 | -- | -- | -- | -- |
| 46.12 | 0.318 | 11.7 | -0.322 | 1.56 | -- | -- | -- | -0.478 | 16 | -- | -- | -- | -- |
| 48.86 | 0.326 | 11.7 | -0.444 | -- | -1.57 | -- | -- | -0.554 | -- | 0.5 | 536 | -- | -- |
| 43 | 0.305 | 11.7 | -- | 1.27 | -0.509 | -- | -- | -0.466 | 17.2 | 8.369 | 110 | -- | -- |
| 179.37 | 0.626 | 11.7 | -0.385 | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
| 48.84 | 0.327 | 11.7 | -- | 1.57 | -- | -- | -- | -0.442 | 16 | -- | -- | -- | -- |
| 54.02 | 0.342 | 11.7 | -- | -- | -1.57 | -- | -- | -0.516 | -- | 1.18 | 537 | -- | -- |
| 183.28 | 0.632 | 11.7 | -- | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 2 | 30.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 4 | 30.59 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 5 | 30.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 7 | 30.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 8 | 30.80 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 10 | 30.80 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 14 | 30.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 15 | 30.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 17 | 30.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 18 | 30.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 21 | 30.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 22 | 30.84 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 27 | 30.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 31 | 30.89 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 42 | 30.91 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 45 | 30.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 48 | 30.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 20 |
| 49 | 30.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 55 | 31.08 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 56 | 31.12 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 4 |
| 57 | 31.12 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 83 | 31.61 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 84 | 31.63 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 118 | 31.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 154 | 32.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 156 | 32.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 158 | 32.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 163 | 32.07 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 165 | 32.07 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 226 | 32.34 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 234 | 32.40 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 246 | 32.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 287 | 32.58 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 295 | 32.63 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 335 | 32.72 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 480 | 33.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 13 |
| 482 | 33.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 496 | 33.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 498 | 33.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 500 | 33.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 501 | 33.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 503 | 33.11 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 525 | 33.16 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 541 | 33.17 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 547 | 33.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 572 | 33.30 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 583 | 33.32 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 654 | 33.51 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 662 | 33.52 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 769 | 33.77 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 792 | 33.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 834 | 33.92 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 835 | 33.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 838 | 33.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 842 | 33.92 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 847 | 33.92 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 848 | 33.92 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 851 | 33.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 923 | 34.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 949 | 34.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 997 | 34.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 4 |