Os08g0171700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0171700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.16 | 0.515 | 12.4 | -1.77 | 1.34 | 2.42 | -1.14 | -5.62 | -0.0411 | 16.5 | 21.67 | 1516 | -- | -- |
| 141.63 | 0.554 | 12.3 | -0.8 | 1.31 | 3.01 | -1.1 | -- | 0.124 | 16.5 | 12.01 | 7611 | -- | -- |
| 123.22 | 0.517 | 12.4 | -1.85 | 1.29 | 2.47 | -- | -5.8 | -0.0694 | 16.4 | 22.04 | 1526 | -- | -- |
| 144.93 | 0.561 | 12.3 | -0.817 | 1.31 | 3.02 | -- | -- | 0.0977 | 16.4 | 10.6 | 7694 | -- | -- |
| 158.38 | 0.586 | 12.3 | -1.06 | -- | 3.2 | -- | -5.63 | 0.117 | -- | 20.64 | 294 | -- | -- |
| 290.73 | 0.799 | 12.1 | 0.73 | 1.29 | -- | -1.25 | -- | 0.933 | 16.7 | -- | -- | -- | -- |
| 294.85 | 0.804 | 12.1 | 0.723 | 1.29 | -- | -- | -- | 0.927 | 16.6 | -- | -- | -- | -- |
| 184.33 | 0.632 | 12.2 | -0.072 | -- | 3.57 | -- | -- | 0.397 | -- | 14.9 | 313 | -- | -- |
| 157.26 | 0.584 | 12.2 | -- | 1.34 | 2.54 | -- | -- | 0.306 | 16.5 | 11.92 | 7440 | -- | -- |
| 382.75 | 0.914 | 12.1 | 0.674 | -- | -- | -- | -- | 0.893 | -- | -- | -- | -- | -- |
| 308.64 | 0.822 | 12.1 | -- | 1.27 | -- | -- | -- | 0.846 | 16.6 | -- | -- | -- | -- |
| 184.46 | 0.633 | 12.2 | -- | -- | 3.53 | -- | -- | 0.407 | -- | 15 | 313 | -- | -- |
| 394.74 | 0.927 | 12.1 | -- | -- | -- | -- | -- | 0.818 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 2 | 118.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 3 | 118.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 8 | 118.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 9 | 118.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 13 | 119.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 34 | 119.92 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 47 | 120.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 49 | 120.64 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 113 | 121.91 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 176 | 123.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 269 | 126.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 313 | 126.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 387 | 127.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 400 | 127.70 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 432 | 127.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 479 | 128.82 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 535 | 129.66 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 537 | 129.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 539 | 129.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 554 | 129.92 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 572 | 130.05 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 579 | 130.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 591 | 130.30 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 592 | 130.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 598 | 130.35 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 626 | 130.68 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 634 | 130.78 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 637 | 130.82 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 643 | 130.86 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 653 | 130.93 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 697 | 131.22 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 709 | 131.28 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 711 | 131.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 717 | 131.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 718 | 131.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 722 | 131.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 727 | 131.41 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 754 | 131.54 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 780 | 131.65 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 819 | 131.96 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 820 | 131.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 833 | 132.03 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 856 | 132.12 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 946 | 132.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 949 | 132.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 988 | 132.76 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |