Os08g0171100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRINKLED1 (Activator of sporamin LUC 1).
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Os08g0171100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRINKLED1 (Activator of sporamin LUC 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.43 | 0.136 | 12.4 | 0.237 | 0.333 | 0.294 | 0.227 | -0.144 | 0.262 | 18.4 | 24.36 | 26523 | -- | -- |
| 8.41 | 0.135 | 12.4 | 0.236 | 0.332 | 0.28 | 0.204 | -- | 0.253 | 18.4 | 30.33 | 26596 | -- | -- |
| 8.53 | 0.136 | 12.4 | 0.238 | 0.336 | 0.296 | -- | -0.174 | 0.264 | 18.4 | 23.4 | 26686 | -- | -- |
| 8.53 | 0.136 | 12.4 | 0.247 | 0.333 | 0.284 | -- | -- | 0.264 | 18.3 | 30.25 | 26668 | -- | -- |
| 14.18 | 0.175 | 12.4 | 0.236 | -- | 0.267 | -- | -0.00464 | 0.258 | -- | 30.89 | 23018 | -- | -- |
| 10.62 | 0.153 | 12.4 | 0.285 | 0.327 | -- | 0.245 | -- | 0.176 | 18.4 | -- | -- | -- | -- |
| 10.77 | 0.154 | 12.4 | 0.282 | 0.328 | -- | -- | -- | 0.177 | 18.3 | -- | -- | -- | -- |
| 14.18 | 0.175 | 12.4 | 0.232 | -- | 0.271 | -- | -- | 0.261 | -- | 30.88 | 23026 | -- | -- |
| 9.16 | 0.141 | 12.4 | -- | 0.33 | 0.359 | -- | -- | 0.192 | 18.4 | 29.96 | 30914 | -- | -- |
| 16.35 | 0.189 | 12.4 | 0.273 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 12.86 | 0.168 | 12.4 | -- | 0.324 | -- | -- | -- | 0.146 | 18.4 | -- | -- | -- | -- |
| 14.63 | 0.178 | 12.4 | -- | -- | 0.357 | -- | -- | 0.168 | -- | 46.5 | 31794 | -- | -- |
| 18.32 | 0.2 | 12.4 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.18 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 2 | 8.19 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 8.21 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 25 | 8.26 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 52 | 8.30 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 65 | 8.32 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 67 | 8.33 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 74 | 8.34 | humidity | 70.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 75 | 8.34 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 91 | 8.35 | humidity | 70.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 99 | 8.35 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 139 | 8.37 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 142 | 8.37 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 151 | 8.37 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 158 | 8.38 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 159 | 8.38 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 164 | 8.38 | humidity | 50.0 | 43200 | > th | dose dependent | no | NA | NA |
| 165 | 8.38 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 173 | 8.38 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 9 | 18 |
| 184 | 8.38 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 190 | 8.38 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 201 | 8.38 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 203 | 8.39 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 204 | 8.39 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 217 | 8.39 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 343 | 8.41 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 14 | 22 |
| 350 | 8.42 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 360 | 8.42 | humidity | 90.0 | 43200 | < th | dose dependent | no | NA | NA |
| 389 | 8.42 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 401 | 8.42 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 1 | 22 |
| 424 | 8.43 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 425 | 8.43 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 487 | 8.44 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 488 | 8.44 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 550 | 8.45 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 551 | 8.45 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 605 | 8.46 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 623 | 8.46 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 624 | 8.46 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 673 | 8.47 | wind | 1.0 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 691 | 8.47 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 699 | 8.47 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 703 | 8.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 738 | 8.48 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 745 | 8.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 749 | 8.48 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 751 | 8.48 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 758 | 8.48 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 22 | 22 |
| 768 | 8.48 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 778 | 8.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 9 |
| 852 | 8.49 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 853 | 8.49 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 854 | 8.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 861 | 8.49 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 866 | 8.49 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 873 | 8.49 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 904 | 8.49 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 968 | 8.50 | humidity | 70.0 | 43200 | > th | dose independent | no | NA | NA |
| 970 | 8.50 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 972 | 8.50 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 2 |