Os08g0171000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0171000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.22 | 0.767 | 4.78 | -0.874 | 0.907 | 1.96 | -1.71 | -1.08 | -0.562 | 11.6 | 17.53 | 10 | -- | -- |
| 266.93 | 0.767 | 4.76 | -0.687 | 0.902 | 1.93 | -1.98 | -- | -0.51 | 11.6 | 17.53 | 10 | -- | -- |
| 275.14 | 0.773 | 4.81 | -1.17 | 0.946 | 1.88 | -- | -2.85 | -0.63 | 11.9 | 17.72 | 11 | -- | -- |
| 283.72 | 0.79 | 4.76 | -0.743 | 0.939 | 1.83 | -- | -- | -0.501 | 11.9 | 17.53 | 10 | -- | -- |
| 315.75 | 0.832 | 4.87 | -1.43 | -- | 2.73 | -- | -3.11 | -0.784 | -- | 17.9 | 10 | -- | -- |
| 313.86 | 0.831 | 4.68 | -0.295 | 1.47 | -- | -1.66 | -- | -0.2 | 12.7 | -- | -- | -- | -- |
| 325.37 | 0.845 | 4.69 | -0.356 | 1.48 | -- | -- | -- | -0.207 | 12.8 | -- | -- | -- | -- |
| 325.69 | 0.844 | 4.81 | -0.939 | -- | 2.67 | -- | -- | -0.642 | -- | 17.53 | 10 | -- | -- |
| 297.02 | 0.807 | 4.73 | -- | 1.03 | 1.52 | -- | -- | -0.376 | 12.2 | 17.53 | 10 | -- | -- |
| 461.39 | 1 | 4.72 | -0.41 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 328.71 | 0.848 | 4.68 | -- | 1.48 | -- | -- | -- | -0.168 | 12.8 | -- | -- | -- | -- |
| 347.74 | 0.871 | 4.78 | -- | -- | 2.43 | -- | -- | -0.506 | -- | 17.53 | 10 | -- | -- |
| 465.82 | 1.01 | 4.7 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 261.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 8 | 262.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 40 | 265.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 46 | 266.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 47 | 266.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 50 | 266.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 56 | 266.83 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 59 | 267.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 62 | 267.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 64 | 267.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 100 | 268.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 115 | 269.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 118 | 269.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 14 |
| 142 | 269.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 196 | 270.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 205 | 270.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 209 | 270.88 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 215 | 270.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 216 | 271.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 223 | 271.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 229 | 271.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 279 | 272.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 282 | 272.07 | temperature | 15 | 10 | > th | dose dependent | sin | 0 | NA |
| 317 | 272.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 346 | 272.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 417 | 273.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 444 | 273.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 458 | 273.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 461 | 273.99 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 475 | 274.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 14 |
| 496 | 274.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 532 | 274.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 538 | 274.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 593 | 275.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 601 | 275.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 647 | 275.39 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 651 | 275.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 671 | 275.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 709 | 275.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 820 | 276.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 822 | 276.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 893 | 276.81 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |