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Os08g0170700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.4 (0.0404) R2 : 0.713
β1 : 4.97 (0.148) R2dD : 0.737 R2D : 0.652
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.731 (0.0863) R2dN8 : 0.0606 R2N8 : -0.0239
σ : 0.759
deviance : 263.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
236.36 0.722 4.2 -0.136 0.411 -156 0.728 -324 0.631 12.4 15.01 4239 -- --
248.14 0.739 6.39 4.92 0.416 -1.15 0.666 -- 0.723 12.4 14.63 3920 -- --
238.56 0.719 4.19 -0.132 0.412 -156 -- -324 0.632 12.4 15.02 4203 -- --
238.89 0.72 6.39 4.42 0.314 -0.851 -- -- 0.592 12 18.5 16189 -- --
249.15 0.735 4.2 -0.12 -- -156 -- -324 0.628 -- 15.01 4240 -- --
250.64 0.742 6.39 4.97 0.436 -- 0.529 -- 0.736 12.4 -- -- -- --
251.85 0.743 6.39 4.99 0.434 -- -- -- 0.738 12.4 -- -- -- --
248.38 0.734 6.45 4.19 -- -1.07 -- -- 0.506 -- 18.02 16166 -- --
390.88 0.921 6.76 -- 0.499 -3.66 -- -- -0.909 12.4 76.41 47520 -- --
263.68 0.759 6.4 4.97 -- -- -- -- 0.731 -- -- -- -- --
907.27 1.41 6.51 -- 0.368 -- -- -- 0.183 11.7 -- -- -- --
406.53 0.939 6.77 -- -- -3.63 -- -- -0.906 -- 83.38 47520 -- --
915.78 1.41 6.52 -- -- -- -- -- 0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.62 radiation 40.0 4320 < th dose independent rect. 3 5
2 228.65 radiation 10.0 1440 < th dose independent rect. 18 1
4 228.67 wind 9.0 14400 < th dose independent rect. 24 3
7 229.38 radiation 20.0 270 < th dose dependent rect. 7 17
9 229.48 radiation 40.0 10 < th dose dependent rect. 10 16
10 229.53 radiation 40.0 270 < th dose dependent rect. 6 18
14 229.59 radiation 40.0 4320 < th dose independent rect. 16 16
15 229.66 radiation 10.0 270 < th dose independent rect. 7 17
17 229.82 temperature 15.0 14400 > th dose independent rect. 3 2
18 229.83 temperature 15.0 14400 < th dose independent rect. 3 2
23 229.91 radiation 40.0 270 < th dose independent rect. 5 7
35 230.06 humidity 50.0 14400 > th dose independent rect. 19 8
48 230.29 temperature 15.0 270 > th dose independent rect. 16 8
52 230.34 temperature 20.0 14400 < th dose dependent rect. 14 2
69 230.46 precipitation 0.1 43200 > th dose independent rect. 11 2
70 230.46 precipitation 0.1 43200 > th dose dependent rect. 11 2
73 230.50 temperature 20.0 14400 > th dose independent rect. 12 2
79 230.53 temperature 20.0 14400 < th dose independent rect. 12 2
87 230.58 temperature 15.0 14400 > th dose independent rect. 23 1
91 230.60 precipitation 0.1 43200 < th dose independent rect. 11 2
92 230.60 precipitation 0.1 43200 < th dose dependent rect. 11 2
96 230.63 temperature 15.0 14400 > th dose independent rect. 23 7
105 230.66 temperature 15.0 14400 > th dose independent rect. 19 11
144 230.79 temperature 15.0 14400 < th dose independent rect. 23 1
151 230.80 temperature 15.0 14400 > th dose independent rect. 3 12
170 230.84 temperature 15.0 14400 > th dose independent rect. 3 18
172 230.85 temperature 15.0 14400 < th dose independent rect. 23 7
186 230.88 humidity 90.0 90 < th dose independent rect. 21 15
189 230.89 temperature 20.0 14400 < th dose independent rect. 15 1
192 230.89 temperature 15.0 14400 > th dose independent rect. 3 15
202 230.93 temperature 15.0 14400 > th dose independent sin 9 NA
251 231.06 wind 9.0 14400 < th dose independent rect. 10 1
257 231.07 temperature 15.0 14400 < th dose independent rect. 18 12
258 231.07 radiation 10.0 1440 < th dose independent rect. 18 12
310 231.17 temperature 15.0 14400 > th dose independent rect. 23 22
349 231.25 temperature 15.0 14400 > th dose independent rect. 23 16
352 231.25 wind 9.0 43200 > th dose dependent rect. 1 1
360 231.27 wind 9.0 14400 > th dose independent rect. 1 10
408 231.35 temperature 15.0 14400 > th dose independent rect. 17 21
416 231.36 temperature 15.0 14400 > th dose independent rect. 19 20
468 231.44 temperature 30.0 270 < th dose independent rect. 5 6
474 231.45 temperature 15.0 14400 > th dose independent no NA NA
476 231.45 wind 9.0 14400 > th dose independent rect. 4 7
485 231.46 temperature 20.0 14400 > th dose independent rect. 9 5
503 231.49 atmosphere 1005.0 14400 > th dose independent rect. 18 1
516 231.51 temperature 15.0 14400 < th dose independent sin 10 NA
542 231.55 wind 9.0 14400 > th dose independent rect. 10 1
568 231.59 radiation 10.0 1440 < th dose independent rect. 3 3
576 231.62 temperature 15.0 14400 < th dose independent rect. 3 12
580 231.63 temperature 20.0 14400 > th dose independent rect. 9 2
594 231.65 humidity 90.0 90 < th dose independent rect. 18 18
604 231.67 radiation 1.0 14400 > th dose independent rect. 13 1
605 231.67 radiation 1.0 14400 < th dose dependent rect. 12 2
610 231.69 temperature 15.0 14400 < th dose independent rect. 3 18
612 231.70 humidity 90.0 270 < th dose independent rect. 18 6
618 231.72 temperature 10.0 270 > th dose dependent rect. 18 6
619 231.72 wind 9.0 14400 > th dose dependent rect. 22 15
620 231.73 temperature 20.0 14400 < th dose independent rect. 9 1
622 231.74 radiation 10.0 1440 < th dose independent rect. 18 4
644 231.78 radiation 40.0 270 < th dose dependent rect. 6 6
647 231.79 temperature 15.0 1440 > th dose independent rect. 8 19
662 231.82 wind 9.0 14400 > th dose dependent rect. 20 17
666 231.83 wind 9.0 14400 > th dose dependent rect. 24 12
669 231.85 radiation 1.0 14400 < th dose independent rect. 13 1
673 231.86 atmosphere 1005.0 14400 < th dose independent rect. 18 1
676 231.86 atmosphere 995.0 270 > th dose independent rect. 15 9
679 231.87 wind 9.0 14400 < th dose independent rect. 6 5
719 231.94 temperature 15.0 14400 < th dose independent rect. 23 22
720 231.95 wind 9.0 14400 > th dose independent rect. 6 5
721 231.95 radiation 40.0 4320 < th dose independent rect. 20 12
748 232.01 temperature 10.0 43200 > th dose independent rect. 8 5
750 232.01 radiation 20.0 4320 < th dose independent rect. 17 14
759 232.03 temperature 15.0 14400 > th dose independent rect. 20 1
762 232.03 temperature 15.0 14400 < th dose independent rect. 23 16
770 232.04 wind 9.0 14400 > th dose dependent rect. 1 10
789 232.08 precipitation 0.1 43200 < th dose independent rect. 7 7
795 232.08 precipitation 0.1 43200 < th dose dependent rect. 7 7
796 232.09 temperature 15.0 14400 > th dose independent rect. 23 3
797 232.09 precipitation 0.1 43200 > th dose independent rect. 7 7
801 232.10 radiation 20.0 270 < th dose independent rect. 7 2
867 232.24 radiation 30.0 270 < th dose independent rect. 15 9
873 232.25 precipitation 0.1 43200 > th dose independent rect. 6 10
874 232.25 precipitation 0.1 43200 < th dose independent rect. 6 10
876 232.25 precipitation 0.1 43200 < th dose dependent rect. 6 10
892 232.28 wind 9.0 14400 > th dose dependent rect. 4 7
958 232.37 temperature 15.0 14400 < th dose independent no NA NA
994 232.42 temperature 10.0 43200 > th dose independent rect. 10 3