Os08g0170500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0170500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.85 | 0.332 | 8.09 | 0.992 | 0.366 | -1.01 | -0.557 | 2.51 | 0.262 | 2.04 | 26.6 | 4634 | -- | -- |
| 55.6 | 0.347 | 8.14 | 0.43 | 0.411 | -0.732 | -0.488 | -- | 0.259 | 1.94 | 23.21 | 6405 | -- | -- |
| 50.79 | 0.332 | 8.09 | 1.04 | 0.362 | -1.04 | -- | 2.72 | 0.246 | 2.19 | 26.88 | 4613 | -- | -- |
| 56.25 | 0.349 | 8.14 | 0.445 | 0.416 | -0.763 | -- | -- | 0.319 | 2.07 | 23.5 | 10933 | -- | -- |
| 58.3 | 0.356 | 8.08 | 1.11 | -- | -1.04 | -- | 2.89 | 0.278 | -- | 27.11 | 4670 | -- | -- |
| 73.24 | 0.401 | 8.21 | 0.00965 | 0.368 | -- | -0.597 | -- | -0.0281 | 2.32 | -- | -- | -- | -- |
| 74.54 | 0.404 | 8.21 | 0.026 | 0.368 | -- | -- | -- | -0.0248 | 2.49 | -- | -- | -- | -- |
| 65.52 | 0.377 | 8.12 | 0.502 | -- | -0.766 | -- | -- | 0.341 | -- | 23.3 | 10484 | -- | -- |
| 59.63 | 0.36 | 8.16 | -- | 0.394 | -0.549 | -- | -- | 0.148 | 2.15 | 28 | 7373 | -- | -- |
| 82.51 | 0.424 | 8.2 | 0.0416 | -- | -- | -- | -- | -0.0157 | -- | -- | -- | -- | -- |
| 74.55 | 0.404 | 8.21 | -- | 0.369 | -- | -- | -- | -0.0277 | 2.49 | -- | -- | -- | -- |
| 65.51 | 0.377 | 8.19 | -- | -- | -0.704 | -- | -- | 0.0362 | -- | 27.14 | 4701 | -- | -- |
| 82.56 | 0.424 | 8.21 | -- | -- | -- | -- | -- | -0.0203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 49.12 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 3 | 49.50 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 4 | 50.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 5 | 50.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 6 | 50.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 7 | 50.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 9 | 50.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 14 | 50.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 15 | 50.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 17 | 50.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 10 |
| 31 | 50.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 33 | 50.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 36 | 50.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 51 | 50.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 80 | 50.61 | temperature | 25 | 4320 | > th | dose dependent | sin | 0 | NA |
| 114 | 50.74 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 121 | 50.78 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 126 | 50.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 157 | 50.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 172 | 50.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 194 | 50.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 209 | 51.03 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 217 | 51.05 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 253 | 51.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 326 | 51.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 334 | 51.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 337 | 51.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 339 | 51.22 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 345 | 51.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 377 | 51.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 383 | 51.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 385 | 51.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 413 | 51.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 423 | 51.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 455 | 51.47 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 492 | 51.54 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 576 | 51.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 609 | 51.67 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 626 | 51.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 679 | 51.77 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 763 | 51.85 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 793 | 51.90 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 867 | 51.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 873 | 51.99 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 14 |
| 882 | 52.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 889 | 52.01 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 16 |
| 942 | 52.08 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |