Os08g0170200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0170200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.08 | 0.699 | 4.85 | 2.63 | 1.94 | -1.43 | -1.18 | -0.425 | 0.33 | 1.52 | 25.4 | 3606 | -- | -- |
| 221.13 | 0.693 | 4.84 | 2.72 | 1.94 | -1.45 | -1.19 | -- | 0.354 | 1.5 | 25.3 | 3605 | -- | -- |
| 226.59 | 0.701 | 4.85 | 2.65 | 1.96 | -1.43 | -- | -0.553 | 0.335 | 1.53 | 25.39 | 3697 | -- | -- |
| 226.75 | 0.701 | 4.83 | 2.77 | 1.95 | -1.48 | -- | -- | 0.345 | 1.54 | 25.47 | 3698 | -- | -- |
| 346.44 | 0.872 | 4.75 | 3.06 | -- | -2.64 | -- | 3.29 | 0.561 | -- | 25.39 | 3697 | -- | -- |
| 281.42 | 0.786 | 4.84 | 2.28 | 1.8 | -- | -1.35 | -- | 0.298 | 1.64 | -- | -- | -- | -- |
| 288.58 | 0.796 | 4.84 | 2.32 | 1.8 | -- | -- | -- | 0.305 | 1.69 | -- | -- | -- | -- |
| 315.78 | 0.831 | 4.72 | 3.02 | -- | -3.43 | -- | -- | 0.802 | -- | 1.435 | 4648 | -- | -- |
| 408.16 | 0.941 | 4.92 | -- | 1.9 | -0.766 | -- | -- | -0.09 | 1.7 | 29.15 | 4278 | -- | -- |
| 485.67 | 1.03 | 4.82 | 2.4 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 431.05 | 0.971 | 4.9 | -- | 1.84 | -- | -- | -- | 0.0464 | 1.73 | -- | -- | -- | -- |
| 527.17 | 1.07 | 4.81 | -- | -- | -2.11 | -- | -- | 0.371 | -- | 21 | 2 | -- | -- |
| 637.34 | 1.18 | 4.88 | -- | -- | -- | -- | -- | 0.0794 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 2 | 215.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 3 | 216.01 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 4 | 216.25 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 8 | 216.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 11 | 217.05 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 16 | 217.53 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 33 | 217.71 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 35 | 217.78 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 40 | 217.86 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 48 | 218.09 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 56 | 218.38 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 59 | 218.54 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 64 | 219.14 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 66 | 219.15 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 70 | 219.33 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 88 | 219.47 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 93 | 219.60 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 94 | 219.71 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 95 | 219.71 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 115 | 219.73 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 139 | 219.94 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 141 | 219.94 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 143 | 220.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 158 | 220.03 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 166 | 220.30 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 169 | 220.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 176 | 220.69 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 184 | 220.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 188 | 220.99 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 199 | 221.23 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 200 | 221.25 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 205 | 221.32 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 214 | 221.48 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 225 | 221.50 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 226 | 221.52 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 269 | 221.81 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 271 | 221.83 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 277 | 221.88 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 284 | 221.90 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 287 | 221.92 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 291 | 221.92 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 319 | 221.97 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 375 | 222.14 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 387 | 222.18 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 453 | 222.32 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 493 | 222.39 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 510 | 222.44 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 515 | 222.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 530 | 222.52 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 535 | 222.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 540 | 222.55 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 544 | 222.56 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 548 | 222.57 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 613 | 222.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 614 | 222.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 640 | 222.84 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 667 | 222.91 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 678 | 222.93 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 694 | 222.96 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 698 | 222.97 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 17 |
| 714 | 223.00 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 747 | 223.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 790 | 223.11 | temperature | 30.0 | 4320 | < th | dose independent | sin | 5 | NA |
| 943 | 223.35 | temperature | 30.0 | 4320 | > th | dose independent | sin | 6 | NA |