Os08g0170100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0170100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NB-ARC domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.3 | 0.283 | 9.85 | 0.458 | 1.2 | 1.66 | -0.347 | -0.717 | -0.00457 | 23.9 | 29.14 | 10 | -- | -- |
| 36.77 | 0.285 | 9.87 | 0.323 | 1.21 | 1.66 | -0.533 | -- | -0.0304 | 24 | 28.2 | 13 | -- | -- |
| 36.64 | 0.284 | 9.85 | 0.518 | 1.21 | 1.64 | -- | -1.04 | 0.00188 | 24 | 29.14 | 10 | -- | -- |
| 37.87 | 0.287 | 9.86 | 0.345 | 1.22 | 1.65 | -- | -- | -0.0233 | 24 | 28.05 | 6 | -- | -- |
| 105.17 | 0.48 | 9.78 | 0.757 | -- | 2.7 | -- | -0.912 | 0.2 | -- | 29.8 | 5 | -- | -- |
| 75.89 | 0.408 | 9.95 | -0.0688 | 1.69 | -- | -0.417 | -- | -0.378 | 0.596 | -- | -- | -- | -- |
| 76.63 | 0.41 | 9.95 | -0.0531 | 1.69 | -- | -- | -- | -0.376 | 0.601 | -- | -- | -- | -- |
| 106.3 | 0.48 | 9.8 | 0.61 | -- | 2.7 | -- | -- | 0.163 | -- | 29.7 | 3 | -- | -- |
| 40.66 | 0.299 | 9.88 | -- | 1.27 | 1.51 | -- | -- | -0.0858 | 0.111 | 27.69 | 6 | -- | -- |
| 255.87 | 0.747 | 9.91 | 0.00653 | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
| 76.7 | 0.41 | 9.94 | -- | 1.69 | -- | -- | -- | -0.37 | 0.6 | -- | -- | -- | -- |
| 115.36 | 0.5 | 9.82 | -- | -- | 2.53 | -- | -- | 0.0674 | -- | 29.8 | 2 | -- | -- |
| 255.87 | 0.747 | 9.91 | -- | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 2 | 36.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 3 | 36.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 4 | 36.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 6 | 36.51 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 7 | 36.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 36.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 14 | 36.95 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 17 | 37.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 18 | 37.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 24 | 37.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 25 | 37.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 33 | 38.49 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 38 | 38.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 39 | 38.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 43 | 39.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 44 | 39.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 45 | 39.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 78 | 40.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 187 | 42.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 225 | 42.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 258 | 43.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 265 | 43.44 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 297 | 43.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 327 | 43.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 337 | 43.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 357 | 44.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 402 | 44.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 409 | 44.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 425 | 44.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 580 | 45.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 593 | 45.85 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 631 | 46.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 650 | 46.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 684 | 46.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 702 | 46.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 15 |
| 826 | 46.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 896 | 46.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 942 | 46.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 8 |
| 984 | 46.78 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 985 | 46.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 3 |